Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01505 and BL05083
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:59
# Commandline: needle
# -asequence dna-align/BSNT_01505___ssuD.1.5803.seq
# -bsequence dna-align/BL05083___ssuD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01505___ssuD-BL05083___ssuD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01505___ssuD-BL05083___ssuD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01505___ssuD
# 2: BL05083___ssuD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1163
# Identity: 836/1163 (71.9%)
# Similarity: 836/1163 (71.9%)
# Gaps: 64/1163 ( 5.5%)
# Score: 2843.5
#
#
#=======================================
BSNT_01505___ 1 ATGGAAATTCTTTGGTTTATACCGACTCATGGAGACGCGA-GATATTTAG 49
.||||.|||.|.||||||||.|||||||||||.|||| || |.|||.|.|
BL05083___ssu 1 TTGGACATTTTATGGTTTATTCCGACTCATGGCGACG-GACGTTATCTTG 49
BSNT_01505___ 50 GATCTGAAA---GTGATGGACGGACTGCGGATCATCTTTACTTTAAACAA 96
|..| ||| |.|| |||.|..|.||.|||||....||||||.|.||.
BL05083___ssu 50 GTAC--AAACACGGGA-GGAAGAGCCGCAGATCACACCTACTTTCAGCAG 96
BSNT_01505___ 97 GTCGCGCAGGCGGCAGACAGGCTGGGATATACAGGAGTTCTTCTGCCGAC 146
||.|||||||||||.||||||||.||.||||||||.||||||||.|||||
BL05083___ssu 97 GTGGCGCAGGCGGCTGACAGGCTTGGGTATACAGGGGTTCTTCTTCCGAC 146
BSNT_01505___ 147 GGGAAGATCGTGCGAGGACCCGTGGCTTACAGCGTCGGCACTGGCAGGAG 196
|||||||||||||||.|||||||||.||||.||..|.||.|||||...||
BL05083___ssu 147 GGGAAGATCGTGCGAAGACCCGTGGATTACCGCAGCCGCTCTGGCGTCAG 196
BSNT_01505___ 197 AAACAAAGGACTTAAAGTTTTTAGTCGCGGTAAGACCTGGTTTAATGCAG 246
..||.||..|..|.||||||||.|||||.||||||||.|||||.||||||
BL05083___ssu 197 TCACGAAAAATCTGAAGTTTTTGGTCGCTGTAAGACCCGGTTTGATGCAG 246
BSNT_01505___ 247 CCTTCTCTGGCAGCCAGAATGACGTCCACTCTAGACCGCATTTCAGACGG 296
||.||..|.||.||..|.|||.|.||.||..|.||.||..||.||||.||
BL05083___ssu 247 CCGTCGGTTGCGGCGCGGATGGCTTCGACATTCGATCGTCTTGCAGAGGG 296
BSNT_01505___ 297 CCGGCTGCTGATCAACGTTGTGGCTGGGGGCGATCCGTATGAGCTGGCAG 346
|.||||.||.|||||.||.||.||.||.||.|||||||||||..|.||.|
BL05083___ssu 297 CAGGCTTCTCATCAATGTGGTCGCCGGCGGTGATCCGTATGAATTAGCCG 346
BSNT_01505___ 347 GCGATGGCCTGTTTATCAGCCATGATGAGCGCTACGAGGCAACAGACGAA 396
||||.|||||||||||||||||||||||.||.||.||.||.|||.|.||.
BL05083___ssu 347 GCGACGGCCTGTTTATCAGCCATGATGAACGGTATGAAGCGACAAATGAG 396
BSNT_01505___ 397 TTTTTAACCGTTTGGCGGAGACTTTTGCAGGGAGAAACGGTTTCCTA-TG 445
|||.|...|.|.||||||...|||||..|.||.||.||.||...||| |.
BL05083___ssu 397 TTTCTCGACATATGGCGGTCGCTTTTAAAAGGCGAGACCGTCAGCTACTC 446
BSNT_01505___ 446 AAGGAAAGCATAT-AAAAGTGGAAAAC-AGCAATCTACTTTTCCCG-CCG 492
|.||||| ||..| ||.|.| |||||| .||..| |.||||||||| |||
BL05083___ssu 447 AGGGAAA-CACCTGAAGACT-GAAAACGGGCGCT-TGCTTTTCCCGCCCG 493
BSNT_01505___ 493 CAGCAAGAGCCGCATCCGCCCATCTATTTCGGTGGTTCGTCACAGGCTGG 542
| .|||.||||.||||||||.||||||||.||.||.||||||.||||.||
BL05083___ssu 494 C-CCAACAGCCTCATCCGCCAATCTATTTTGGCGGCTCGTCAAAGGCCGG 542
BSNT_01505___ 543 GATTGAAGCTGCCGCAAAGCATACAGACGTGTACTTGACATGGGGTGAGC 592
|...||..|||||||.||.||..|.|||||.||.|||||||||||.||||
BL05083___ssu 543 GCAGGAGACTGCCGCCAAACACGCGGACGTCTATTTGACATGGGGAGAGC 592
BSNT_01505___ 593 CGCCTGAACAAGTAAAAGAAAAAATAGAAAGAGTCAAAAAGCAAGCGGCA 642
|||||.|.|..||.|||||||||||..||...|||||||||.|.||.|.|
BL05083___ssu 593 CGCCTCATCTCGTCAAAGAAAAAATCCAATCTGTCAAAAAGAAGGCTGAA 642
BSNT_01505___ 643 AAAGAAGGGAGATCCGTTCGATTTGGCATTAGGCTGCATGTCATTGCCCG 692
||||||||||||.||||.||.|||||.||.||||||||.||.||.|.|.|
BL05083___ssu 643 AAAGAAGGGAGAACCGTCCGTTTTGGAATCAGGCTGCACGTGATCGTCAG 692
BSNT_01505___ 693 TGAAACTGAACAAGAGGCATGGGAAGCGGCAGAGCGCTTGATCAGCCACT 742
.|||||.|||.|||||||.|||.|.|||||.||..|..|||||||||.||
BL05083___ssu 693 GGAAACGGAAAAAGAGGCCTGGCAGGCGGCGGATAGACTGATCAGCCGCT 742
BSNT_01505___ 743 TGGATGATGACACCATTGCCAAAGCGCAGGCTGCTTTGAGCCGTTACGAC 792
||||.|||||.||.||||||..|||.||....||..|||..||....||.
BL05083___ssu 743 TGGAGGATGAAACGATTGCCGCAGCCCAAAACGCGATGAAACGGATGGAT 792
BSNT_01505___ 793 TCTTCAGGCCAGCAGCGGATGGCCGTC--CTTCATCAAGGAGATCGGACG 840
||.|||||.||..||.|||||| .|| |||||.||.||| |.|.||.|
BL05083___ssu 793 TCATCAGGACAAAAGAGGATGG--TTCAGCTTCACCAGGGA-AACAGAAG 839
BSNT_01505___ 841 -AAGCTTGAAATCAGCCCGAATCTGTGGGCGGGGATCGGTCTGGTCAGAG 889
||.|||||.||||||||||||||.||||||||||||||.||||||||||
BL05083___ssu 840 CAATCTTGAGATCAGCCCGAATCTTTGGGCGGGGATCGGACTGGTCAGAG 889
BSNT_01505___ 890 GAGGGGCAGGAACAGCCCTTGTCGGTGATCCGCAGACGATTGCTAACCGG 939
|.||.||.||||||||.||.||||||||||||.|.|||.|.||.|.|||.
BL05083___ssu 890 GCGGAGCGGGAACAGCGCTCGTCGGTGATCCGGAAACGGTAGCCAGCCGA 939
BSNT_01505___ 940 ATAGCGGAGTAC-CAGGCACTCGGCATAGAATCGTTTATATTCTCAGGCT 988
|||...||.||| |.|.|| |||||||.||.||.|||||.||||||||.|
BL05083___ssu 940 ATAAAAGAATACGCCGACA-TCGGCATTGAGTCCTTTATCTTCTCAGGTT 988
BSNT_01505___ 989 ATCCGCATTTAGAAGAAGCGTATTATTTTGCAGAGCTTGTATTTCCGCTT 1038
||||.|||.|.|||||||||||..||||||||||....||.||||||||.
BL05083___ssu 989 ATCCACATCTTGAAGAAGCGTACCATTTTGCAGAAAAGGTTTTTCCGCTC 1038
BSNT_01505___ 1039 TTGCCGTTTGAAAATGATCGGACGAGAAAGCTTCAGAACAAAAG----GG 1084
.|.||||| |||.||| ||.||||| ||..|||| .|
BL05083___ssu 1039 CTTCCGTT---------TCGAACG---AAACTTCA-AAGTAAAGCATCAG 1075
BSNT_01505___ 1085 GAGAAGCGGTAGGAAA-CACTTATTTT-------GTCAAAGAGAAAAATG 1126
|.||||...|.||||| .|| .||||| |.||||.|||||||
BL05083___ssu 1076 GCGAAGTCATCGGAAATGAC-CATTTTCCGTCGAGGCAAAAAGAAAAA-- 1122
BSNT_01505___ 1127 CATGA-------- 1131
|
BL05083___ssu 1123 ----ACCGTTTAA 1131
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