Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01149 and BL05064
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:40
# Commandline: needle
# -asequence dna-align/BSNT_01149___yerO.1.5803.seq
# -bsequence dna-align/BL05064___yerO.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01149___yerO-BL05064___yerO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01149___yerO-BL05064___yerO.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01149___yerO
# 2: BL05064___yerO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 973
# Identity: 537/973 (55.2%)
# Similarity: 537/973 (55.2%)
# Gaps: 248/973 (25.5%)
# Score: 1305.5
#
#
#=======================================
BSNT_01149___ 1 ATGAATGAAAAAAAAGAGAGAATCATAAAAACCAGCATTCGTTTATTTGC 50
||||..||||||.||||.|.||||||.|||.|..||.|.|...|.||.||
BL05064___yer 1 ATGACAGAAAAAGAAGAAAAAATCATTAAAGCAGGCCTGCACCTGTTCGC 50
BSNT_01149___ 51 GAAAAAAGGATTCGCAGCTACGACGATCCAAGAAATCGCCAGTGAATGCG 100
||||||.||.||.||..|.||.|||||.|||||.|||||||.|||||||.
BL05064___yer 51 GAAAAACGGTTTTGCTTCCACAACGATTCAAGACATCGCCAATGAATGCA 100
BSNT_01149___ 101 GCATTTCGAAGGGCGCTTTTTATTTGCACTTCAAATCGAAAGAAGCGCTG 150
.|||.||.||.||.|||||.||..||||.|||||.|||||||||||.||.
BL05064___yer 101 ACATCTCAAAAGGGGCTTTCTACCTGCATTTCAAGTCGAAAGAAGCTCTT 150
BSNT_01149___ 151 CTGTT----ATC-TGCCTGTGAATATTATATCG---GTATGTCTATGAAC 192
.||.| ||| | |.|.|||||||||| |.|||
BL05064___yer 151 TTGCTCGCAATCAT-----TAAGTATTATATCGATCGAATG--------- 186
BSNT_01149___ 193 AAAATGAAAAATATAGAAGAAGATCTTGCCGGA-AAG------CCGCCTA 235
|||.||||||| |||||||.|.|.|.| ||| ||.||||
BL05064___yer 187 ---ATGGAAAATAT----GAAGATCATTCAGCAGAAGAATTTCCCTCCTA 229
BSNT_01149___ 236 AAGAAGTTTTGAAAAAACAAATTGGCGCTCAATTTGAGGATTTTCGCGAT 285
|.|||...||.||..|.||.||||....|||| ||.|| ||.||.
BL05064___yer 230 AGGAAACGTTCAAGGAGCAGATTGCTTATCAA-TTCAG------CGAGAG 272
BSNT_01149___ 286 CATAAA-------GATTTTATCGTTCTTTTGCTTACCGAAAATATCATTC 328
||...| ||||||||..|..|..||.|.|.||||.|.|.|||.|
BL05064___yer 273 CAAGGAGCACCGCGATTTTATTCTCGTGATGATCAGCGAACACAGCATAC 322
BSNT_01149___ 329 CGGAAA--ATCAAGAAATC-AAGCAATACTTTTACAAA-GTAA------- 367
|||||| |.|||| ||| ||| |||| |||||.||| ||.|
BL05064___yer 323 CGGAAAACAGCAAG--ATCGAAG-AATA-TTTTAAAAATGTCAGCCAAAA 368
BSNT_01149___ 368 ---CCATGGAGACGGAT-AAGCTGTACCGGAACGCCTTGCTG---GTATC 410
||| .||||||.|| || ||||| |||| |...|
BL05064___yer 369 ATTCCA-CGAGACGTATCAA----------AACGC---GCTGTCAGCCGC 404
BSNT_01149___ 411 CTATGGCGAAGGAATCG---AGCGGTATGTCGCAGATCTGTCCATCATGG 457
|||.||.|| .||.| |||..|||.|..||||..|||||.|.||.|
BL05064___yer 405 CTACGGTGA---CATTGTGAAGCCTTATCTGTCAGACTTGTCCGTGATCG 451
BSNT_01149___ 458 --CAAGAGGCATTGTGCATTCCTATATGAACGTGATGGTATTTAACGATG 505
|| ||||||.|||||.||.|||...||..||.|..|.|||| |||
BL05064___yer 452 TTCA--AGGCATCGTGCAGTCTTATCAAAATTTGTTTATCTTTA---ATG 496
BSNT_01149___ 506 AGCTTAATATCGATGCAGAAGAAATCTCAGCCTTTATTATTGAG-AGACT 554
|.||..||||||||....|.|||.|..|.|..||||||| |||| |||.|
BL05064___yer 497 AACTGGATATCGATTTTTACGAACTTGCGGATTTTATTA-TGAGAAGAAT 545
BSNT_01149___ 555 GGATGATC-------------TTGTACA----GGGGCTGAGCCGTTCT-- 585
.||||| | |.||.|| ||||...|||||.|||
BL05064___yer 546 CGATGA-CATGATTGATGGCATGGTTCAAAACGGGGAGCAGCCGATCTTG 594
BSNT_01149___ 586 ------------------------------GCACTCAAT----CCGATTG 601
||...|||| |||||
BL05064___yer 595 GCCGGCCGGACGTACAGCTATTACCGGAACGCCGGCAATACGGCCGAT-- 642
BSNT_01149___ 602 TATCAAA-AGAC-ATTTTCAACCCGATGCCTGCGGAAAAAGACCAGCTGC 649
||| |.|| |||| |||||.| ||
BL05064___yer 643 ----AAACATACGATTT-------------TGCGGGA-----------GC 664
BSNT_01149___ 650 TTGAGGACATTCAGAAAGTGAAAGAAAACAGCAC---GCTGCCCGAGGAT 696
|||| |.||.|..||.|| |||| | |||..|.||.||.
BL05064___yer 665 TTGA--AGATGCCAAACGT---------CAGC-CGGAGCTTTCGGAAGAC 702
BSNT_01149___ 697 ATCACCGTGTCACTTGATGTTATCGAGGAAGAATTGACTCAGGAT--AAA 744
||...|.|..||||.|||||.|||||||||||..|||...||||| ...
BL05064___yer 703 ATTCTCATTACACTGGATGTGATCGAGGAAGAGCTGAGAAAGGATTCGCC 752
BSNT_01149___ 745 CCGCGCAAGCCGATTATTAAAGGCATGCTGTCCAATTTGACCGGAACCAA 794
||||||| ||..|..|..|||||||||||.|.||.||| |.|.|.| |
BL05064___yer 753 CCGCGCA--CCCGTGCTCCAAGGCATGCTGACAAACTTG--CAGCATC-A 797
BSNT_01149___ 795 CGACAAAGAAGTTGAAAGGCTTCGGGCCCTCATCTCTGT----------- 833
.|||||.| |||.| |||||.|.|
BL05064___yer 798 GGACAATG------------TTCAG-----CATCTATATGGAATGATCAC 830
BSNT_01149___ 834 -------CTTTATCTCAATTTGA 849
|||.|| ||| |.|
BL05064___yer 831 CCGTTTCCTTCAT-TCA---TAA 849
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