Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03930 and BL05046

See Amino acid alignment / Visit BSNT_03930 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:56
# Commandline: needle
#    -asequence dna-align/BSNT_03930___yrhM.1.5803.seq
#    -bsequence dna-align/BL05046___yrhM.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03930___yrhM-BL05046___yrhM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03930___yrhM-BL05046___yrhM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03930___yrhM
# 2: BL05046___yrhM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 880
# Identity:     641/880 (72.8%)
# Similarity:   641/880 (72.8%)
# Gaps:          41/880 ( 4.7%)
# Score: 2212.0
# 
#
#=======================================

BSNT_03930___      1 ATGGATAAGAGATT---ACAGCAATTAAGAGAAGAATATAAAAATGTTCC     47
                     ||||||||||.|||   |||||   |.|||.|||.||||.||||.||.||
BL05046___yrh      1 ATGGATAAGAAATTGGAACAGC---TGAGAAAAGCATATCAAAACGTCCC     47

BSNT_03930___     48 GATTCCTAAAGAATTGGATATCA--TTGTTGAAAAAGCCCTTCAGCAAGA     95
                     .|||||.||.||..|||  ||||  ||||.||.|..||.||||||||..|
BL05046___yrh     48 CATTCCGAAGGAGCTGG--ATCAGGTTGTCGAGACTGCGCTTCAGCATAA     95

BSNT_03930___     96 ACCAAAAAAGAA---AAGAATCGTCATGTGGCCGACATCA--GCAGCAAT    140
                     |||.||.|||||   |||.||.||..|.|||||..|||||  ||.|  .|
BL05046___yrh     96 ACCGAAGAAGAAGAGAAGGATAGTGGTATGGCCCGCATCAACGCTG--GT    143

BSNT_03930___    141 CGCTGCAGCTATTTTATTCACTGCGCTTGTTAATATCAA-CCCTGACGCT    189
                     |||.||.|||.|..||||..||||..|.||.|||||||| |||.|| ||.
BL05046___yrh    144 CGCGGCGGCTGTACTATTGGCTGCCGTCGTGAATATCAATCCCGGA-GCA    192

BSNT_03930___    190 GCTCAGGCTATGTCAAGGATCCCTGTCATCGGCAAAATCGTCAAAGCGAT    239
                     ||.|||||.|||||...|||.||||||||||||||..||||.|||||.||
BL05046___yrh    193 GCGCAGGCCATGTCGCAGATACCTGTCATCGGCAAGGTCGTTAAAGCCAT    242

BSNT_03930___    240 CACCTTTATTGAAATCAAAGAGGAAAAAGACCAATCAAGCATTGATGTCA    289
                     |||.||.|..||.||||||.||.||.|.|...||||.||||||||.||.|
BL05046___yrh    243 CACATTCACCGAGATCAAACAGAAAGATGGAGAATCGAGCATTGACGTGA    292

BSNT_03930___    290 AAACACCTGCTTTGTCCGGGCTTTCTAATAA---AGAGCTGGAAAACAGC    336
                     |||||||.|||.|.||| |||||  .|||||   .|||||.|||||..||
BL05046___yrh    293 AAACACCGGCTCTTTCC-GGCTT--GAATAACCGGGAGCTCGAAAATGGC    339

BSNT_03930___    337 ATTAACCAAAAATACTTGAAAGAAAGCCAGCAGCTGTATAAAGAGTTTAT    386
                     ||.|||.|.|||||..|.||.||||||||.|||||.||....||.||.||
BL05046___yrh    340 ATCAACGAGAAATATGTAAAGGAAAGCCATCAGCTTTACCGGGAATTCAT    389

BSNT_03930___    387 ACAGTCCACATCCAAAAACAAAAAAGGGCATCTCAGCATCTACAGTGATT    436
                     ..||...||.|||...||.||||||||||||||||||||||||||.||||
BL05046___yrh    390 GAAGGAGACGTCCCGGAATAAAAAAGGGCATCTCAGCATCTACAGCGATT    439

BSNT_03930___    437 ACGAGACGGTCACAGACACGCCAGATTTACTCTCTATCCGGCGCAATATT    486
                     |.|||||.|||||.||.|||..||||||..|.||.||.|||||.|...|.
BL05046___yrh    440 ATGAGACAGTCACGGATACGAAAGATTTGATTTCGATTCGGCGAAGCGTC    489

BSNT_03930___    487 GAAAAAACACAAGCATCTTCCTACACACAAAGCCGTTATATTACAATTGA    536
                     ||||.|||..||||.||...|||.||..||.|.||.|||||.||.|||||
BL05046___yrh    490 GAAAGAACGGAAGCGTCCAGCTATACCGAACGGCGCTATATCACCATTGA    539

BSNT_03930___    537 CAAAAAGAATGATATTTTACTTACATTAAAAAGCTTATTCAAAGATGAGC    586
                     ||||||||||||..|..|.||.||.||.||||||||.||.|||||.||.|
BL05046___yrh    540 CAAAAAGAATGAAGTCCTGCTCACCTTGAAAAGCTTGTTTAAAGACGACC    589

BSNT_03930___    587 GCTATATTAAAGTCATCAGTCAAAATATTAGAGAGCAAATGAAACAGCAA    636
                     |.|||||.|..|.||||||..||||.||||.|||||||||||||||||||
BL05046___yrh    590 GGTATATCACCGCCATCAGCGAAAACATTAAAGAGCAAATGAAACAGCAA    639

BSNT_03930___    637 ATGAAGGAAGATCCAAATAAAATATATTGGCTCACTGACGAAGATGCAGA    686
                     |||||.||.|||||..||||||||||||||.||..|||||||||.|..||
BL05046___yrh    640 ATGAAAGATGATCCTGATAAAATATATTGGATCGGTGACGAAGAAGTCGA    689

BSNT_03930___    687 ACCGTTCAAAACGATTC--TTCCTGATCAGACGTTTTACATTACTGAAGA    734
                     .||.||| ||||||.||  ..|| ||.||.|..|||||||||||.||..|
BL05046___yrh    690 GCCATTC-AAACGAATCAAGGCC-GACCAAAATTTTTACATTACAGAGAA    737

BSNT_03930___    735 CCATAAACTTGTGATCTCATTTGACGAATATGAAGTCGCCCCCGGCTATA    784
                     .||||||||.|||||.||.|||||.||.|||||||||||.||||||||||
BL05046___yrh    738 TCATAAACTGGTGATTTCGTTTGATGATTATGAAGTCGCTCCCGGCTATA    787

BSNT_03930___    785 TGGGCGTTACC----GAGTTTACAATTCCAAC--AAGCGTCATTTCAAAC    828
                     ||||||    |    ||||||..||||||.||  |.|||  |||||.|||
BL05046___yrh    788 TGGGCG----CGGTGGAGTTTGAAATTCCGACTAAGGCG--ATTTCGAAC    831

BSNT_03930___    829 TTGCTCGTGGGAGAACGTTATATTCGATAA    858
                     .||||..|.||.||.||.|||||.||.||.
BL05046___yrh    832 CTGCTGATCGGCGACCGCTATATCCGCTAG    861


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03930 and BL05046

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
