Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03929 and BL05045
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:56
# Commandline: needle
# -asequence dna-align/BSNT_03929___sigV.1.5803.seq
# -bsequence dna-align/BL05045___sigV.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03929___sigV-BL05045___sigV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03929___sigV-BL05045___sigV.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03929___sigV
# 2: BL05045___sigV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 504
# Identity: 403/504 (80.0%)
# Similarity: 403/504 (80.0%)
# Gaps: 9/504 ( 1.8%)
# Score: 1595.0
#
#
#=======================================
BSNT_03929___ 1 ATGAAGAAAAAACAAACAACAAAAGCGTTGCTTGTCACATGCATAACTGA 50
|||||| ||||||.||.|.|.|||||..||||||.|.||||||||.||
BL05045___sig 1 ATGAAG---AAACAAGCAGCCAGAGCGTCTCTTGTCGCTTGCATAACAGA 47
BSNT_03929___ 51 CCATAAGCAAGATTTCTACAGGTTGGCTTTCAGTTATGTGAAAAATCAAG 100
||..||..||||.||.|||.||.||||.|.|||.||||||||||||||||
BL05045___sig 48 CCGGAAAGAAGACTTTTACCGGCTGGCATACAGCTATGTGAAAAATCAAG 97
BSNT_03929___ 101 ATGACGCATTAGATATTGTTCAGGAATCGATAAAAAAAGCGCT-GAGCTC 149
|.|||||.|||||||||||.||||||||.||.||||||||||| || .||
BL05045___sig 98 AAGACGCCTTAGATATTGTCCAGGAATCAATCAAAAAAGCGCTCGA-TTC 146
BSNT_03929___ 150 AGTTGAAACGGTCAGGAACCCTGAGACGATAAAAAGCTGGTTTTATAAAA 199
.||.||..|.||..|.||.||.||.|||||.|||||||||||||||||||
BL05045___sig 147 CGTCGATTCCGTTCGCAATCCGGATACGATCAAAAGCTGGTTTTATAAAA 196
BSNT_03929___ 200 TTTTAGTGCGGACAGCCATTGATTTTTTGCGCAAACAAAAAAAGATAAGA 249
||||.||||||||.||.||.|||||||||||||||||.|||||..|||..
BL05045___sig 197 TTTTGGTGCGGACGGCAATCGATTTTTTGCGCAAACAGAAAAAACTAAAG 246
BSNT_03929___ 250 GTGATGGACGACGAAACGATAGAATTTTTAAGCAAAGGAAAGGAAG--AC 297
||.|||||.||..|||||||.||.|||||||||.|.||.||||||| ||
BL05045___sig 247 GTTATGGATGATCAAACGATCGAGTTTTTAAGCCAGGGCAAGGAAGATAC 296
BSNT_03929___ 298 CATTACAAGGATACTGATCTCTATGAAGCGCTTGACGAATTGCCGTACCG 347
| |||..||||||.||||||.||||.||||||||.||.||||||.|.|.
BL05045___sig 297 C--TACCGGGATACAGATCTCCATGAGGCGCTTGATGAGTTGCCGCAACC 344
BSNT_03929___ 348 CTATAAAACCATTATTATTTTACGTTTTTTTGAAGACCTCAAATTAGAAG 397
|||..|.|||||||||.||.|.||.|||||.||.||.||||||.|.||||
BL05045___sig 345 CTACCATACCATTATTGTTCTGCGGTTTTTCGAGGATCTCAAACTGGAAG 394
BSNT_03929___ 398 AAATTGCGGAAATTACAGGAGAAAACACGAATACCGTCAAAACGCGCCTA 447
|.||.||||||||.|||||.||||||..||||||..|||||||||||||.
BL05045___sig 395 AGATAGCGGAAATCACAGGCGAAAACTTGAATACGATCAAAACGCGCCTT 444
BSNT_03929___ 448 TACAGAGCATTGAAGCTGATGCGCATTCAGCTGACGAAGGAGGATCTTTC 497
|||||||.|||||||||.||||||||.||..|||||||||||||||||||
BL05045___sig 445 TACAGAGGATTGAAGCTTATGCGCATCCAATTGACGAAGGAGGATCTTTC 494
BSNT_03929___ 498 TTAA 501
||||
BL05045___sig 495 TTAA 498
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