Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00768 and BL05039
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:24
# Commandline: needle
# -asequence dna-align/BSNT_00768___ydbI.1.5803.seq
# -bsequence dna-align/BL05039___ydbI.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00768___ydbI-BL05039___ydbI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00768___ydbI-BL05039___ydbI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00768___ydbI
# 2: BL05039___ydbI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1106
# Identity: 760/1106 (68.7%)
# Similarity: 760/1106 (68.7%)
# Gaps: 118/1106 (10.7%)
# Score: 2460.0
#
#
#=======================================
BSNT_00768___ 1 ATGGCCGCTTTAGTTAAATTTTTTCAGCACCCGGGAGTAAGGCGTTTCTC 50
|||||.||.||..||||||||||||||||.||.||.||.||||||||.||
BL05039___ydb 1 ATGGCAGCGTTGATTAAATTTTTTCAGCATCCTGGGGTCAGGCGTTTTTC 50
BSNT_00768___ 51 CATCTTTGTCGTGTTAACTGGTGTGTTATATCTATTTAAGAGCATGATCA 100
..|.|||||.||.||..|.||.||.||||||||.||....||||||||.|
BL05039___ydb 51 AGTTTTTGTTGTATTGGCGGGGGTTTTATATCTGTTCCGCAGCATGATGA 100
BSNT_00768___ 101 ACTTAATATTGCTTACCTTTATTTTCACATTTCTAATGGATCGTTTGGAG 150
|..|.||||||||.||.|||||.||.||.|||.|.|||.|.|||.||||.
BL05039___ydb 101 ATCTCATATTGCTCACATTTATCTTTACGTTTTTGATGAACCGTCTGGAA 150
BSNT_00768___ 151 CTTGTCGT--GCGGCAGTTTGTAAGCCGGTTCTTCCGCGTGAGCCAGCGG 198
..|||..| |||| .|||.|||.|||.||..|....||.||||||.|
BL05039___ydb 151 AATGTGATCCGCGG--TTTTTTAAACCGCTTTATTAAAGTCAGCCAGAG- 197
BSNT_00768___ 199 GTTGTCATTACGTTTCTTTACATTT---TGCTGGCTGT-------GCTGC 238
..|.|||| |||||| .||| ||| ||||.| || ||
BL05039___ydb 198 --ACTGATTA--TTTCTT---GTTTGTATGC-GGCTCTTGCCATCGC-GC 238
BSNT_00768___ 239 TTACAGTCGGGGGCTTTGTGTTTTATCCGGTCGTCGCGGCGCAGATCCAG 288
||.|..||||.||..|.||.|.|||.||.||..|||...|.|||||.|||
BL05039___ydb 239 TTTCGATCGGCGGTGTGGTCTATTACCCCGTAATCGTCACCCAGATTCAG 288
BSNT_00768___ 289 CAGCTGGTTAAGCA--GATTAAACATATTGCGTATCACCCTGACAGCATC 336
||||||.|.||.|| || ||.|||||.||.|.|||||||||||||||.
BL05039___ydb 289 CAGCTGATCAAACAAGGA--AAGCATATCGCTTCTCACCCTGACAGCATT 336
BSNT_00768___ 337 CCTTTCTTTGATGAGATCACCAGTGTCTTCGGAGATATTAACATCAGTTC 386
|||||..|.|||..|||||||.||.|.|||||.|||||.||..|.|..||
BL05039___ydb 337 CCTTTTCTCGATATGATCACCGGTATGTTCGGCGATATCAATTTGACATC 386
BSNT_00768___ 387 ATATGTCAAAGAAGG--CTTCAATGTAGTGTATACGTATCTGGCCGATAT 434
.|||.|..|| |||| |||.|.|.|| |.|||||.|||.|..|.|||||
BL05039___ydb 387 CTATTTGGAA-AAGGGTCTTAACTTTA-TCTATACATATATCACGGATAT 434
BSNT_00768___ 435 CAGCACATTCGGCTTGCAGGTCGTGATGGCGCTCA----TTCTCAGCATG 480
||||||.||.|||.|||||||.||.||| ||| |||||||||||
BL05039___ydb 435 CAGCACGTTTGGCCTGCAGGTGGTTATG----TCATTGGTTCTCAGCATG 480
BSNT_00768___ 481 TTTTTCTTATTTGA--GAAAA----AACGGCTTTC-TGA-ATTCATGGCG 522
|||||| |||| ||||| ||.| || ||| .||.||||..
BL05039___ydb 481 ---TTCTTA-TTGATCGAAAAAGACAAAG----TCATGAGCTTAATGGAT 522
BSNT_00768___ 523 AAATTTAAAACGAGCAAACTGAGGGTCTTT--TATGAGGAAATTGCTTTT 570
||||||||.|||||||||.| .|.|.||| ||.|||||||||||||..
BL05039___ydb 523 AAATTTAAGACGAGCAAAAT--AGCTATTTTCTACGAGGAAATTGCTTAC 570
BSNT_00768___ 571 TTTGGAAGCAAATTTGCAAGAACGTTCGGCAAGGTGCTCGAGGCTCAATT 620
|||||.|..|||||..|.||||||||||||||||||||.||||||||.||
BL05039___ydb 571 TTTGGGAAAAAATTCACGAGAACGTTCGGCAAGGTGCTTGAGGCTCAGTT 620
BSNT_00768___ 621 TATCATTGCGCTCGTCAACTGTATTCTGACGTTTATCGCGCTTTGGATTA 670
|||.||.||...|.||||.||....||||||...||.||.||....||||
BL05039___ydb 621 TATTATCGCCACCATCAATTGCGCACTGACGACCATTGCCCTCGCCATTA 670
BSNT_00768___ 671 TGCATTTTCCGCAGCTGTTTGGGCTTTCGATTATGGTGTTCTTCCTTGGG 720
||..||||||.|||||.||.||.|||.|..|.||||||||.|||||.|||
BL05039___ydb 671 TGGGTTTTCCTCAGCTTTTCGGCCTTGCCGTCATGGTGTTTTTCCTCGGG 720
BSNT_00768___ 721 TTGATCCCTGTAGCAGGCGTCGTCATTTCCCTGATTCCGCTCAGCATTAT 770
.||.|.||.||.||||||||.||..|.|||||.||||||.|.||||||||
BL05039___ydb 721 CTGGTTCCGGTCGCAGGCGTTGTGCTCTCCCTTATTCCGTTAAGCATTAT 770
BSNT_00768___ 771 CGCCTACAGCACTGGCGGCGGAAT----------GTAT--GTGCTCTACA 808
||||||||||| .||||||||| |||| .||.| |
BL05039___ydb 771 CGCCTACAGCA---TCGGCGGAATCGCTTATATCGTATCACTGGT----A 813
BSNT_00768___ 809 TTGTCCTTGTCAT-AT--TCGCCATTCATGCGATCGAAACATATTTCTTA 855
||| ||||| || ||| |.||||||||.||..|.||||||.|.
BL05039___ydb 814 TTG-----GTCATCATGATCG---TCCATGCGATAGAGGCCTATTTCCTC 855
BSNT_00768___ 856 AATCCGAAGCTGATGTCGGCGAAAACAGAGCTGCCAATCTTTTTCACCTT 905
||||||||..|||||||.||.||.||.||||||||.||.||.|||||.||
BL05039___ydb 856 AATCCGAAATTGATGTCCGCAAAGACGGAGCTGCCGATTTTCTTCACGTT 905
BSNT_00768___ 906 CACTGTACTCATTTTCTCTGAACACTTTTTCGGCATTTGGGGTTTAATTA 955
.|..||.||.|||||.||||||||.|||.|.||.||||||||||||||||
BL05039___ydb 906 TATCGTGCTGATTTTTTCTGAACATTTTATTGGGATTTGGGGTTTAATTA 955
BSNT_00768___ 956 TCGGGATTCCGATCTTTGTGTTTCTCCTTGATATTCTGGATGTCACCAAC 1005
||||.|||||.||.|||||.||.||.||||||||.||.|||||.||.||.
BL05039___ydb 956 TCGGTATTCCAATATTTGTTTTCCTGCTTGATATACTTGATGTTACAAAT 1005
BSNT_00768___ 1006 AAGGAAGATAGGTCTAAAGGACCCCGAGAGAATAG--------CGATAAA 1047
.||| ||| ||| ||| |||.|| ||| |||
BL05039___ydb 1006 CAGG-AGA-------AAA--ACC------GAACAGCAGGCACACGA-AAA 1038
BSNT_00768___ 1048 AAGTAG 1053
.||
BL05039___ydb 1039 TAG--- 1041
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