Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00761 and BL05037
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:23
# Commandline: needle
# -asequence dna-align/BSNT_00761___ydbB.1.5803.seq
# -bsequence dna-align/BL05037___ydbB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00761___ydbB-BL05037___ydbB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00761___ydbB-BL05037___ydbB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00761___ydbB
# 2: BL05037___ydbB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 740
# Identity: 248/740 (33.5%)
# Similarity: 248/740 (33.5%)
# Gaps: 421/740 (56.9%)
# Score: 809.0
#
#
#=======================================
BSNT_00761___ 1 ATGTCCAAGAT-GCAAAA--------CTTGCTCGCCATCG-CAAATGAAG 40
||| ||| |||||| |||| .||.| ||||.||||
BL05037___ydb 1 ATG-----GATCGCAAAACGAATCTTCTTG-----AATTGACAAAGGAAG 40
BSNT_00761___ 41 TCAAAGAAAAGCACGCCAATTTTTCAATCTCAGAGGTCAACGACCACTGC 90
||..|||||||||||||||||||....|.||.||.||.||||||||.||.
BL05037___ydb 41 TCGCAGAAAAGCACGCCAATTTTCTTGTTTCGGAAGTGAACGACCATTGT 90
BSNT_00761___ 91 GTGCGCCTTGCGGTGTTTACGGGAGAATATGACTGGCA---CCATCACCC 137
.||||..||||.||.||...|||.|||||.|..||||| |||| ||
BL05037___ydb 91 ATGCGAATTGCCGTTTTGGAGGGCGAATACGTATGGCATATCCAT---CC 137
BSNT_00761___ 138 TGACTCAGACGAATTGTTTATTGTTCTTGAAGGGGAGCTGCTGATCGATT 187
.|.||||||.|||.|||||||||||.|.||||||||||||.|||||||||
BL05037___ydb 138 CGGCTCAGATGAACTGTTTATTGTTTTGGAAGGGGAGCTGTTGATCGATT 187
BSNT_00761___ 188 TTAAGGA------CAAAGAAACCGCGGTGCTCAAAACAAATGACAGCCTG 231
||.|||| ||.|||| ||.||.|||.|.|||||...||||
BL05037___ydb 188 TTCAGGATCGCCCCACAGAA------GTTCTGAAAGCGAATGATTCCCTG 231
BSNT_00761___ 232 CTGATCCCGAAAGGCACGGTTCACCGCACACGCTCTTACGTCAGAACGGT 281
|||||.|||||||||....|||||||.||||||.||.|.|||||..||||
BL05037___ydb 232 CTGATTCCGAAAGGCGTCATTCACCGGACACGCGCTGATGTCAGGTCGGT 281
BSNT_00761___ 282 AAATCTCTGTGTGGAGCATAAAC--AAGCCGAAACCGTCATCATAGAGGA 329
.||.||.|||.| ||.|.|||| |.||.|||||||||....|.|.|||
BL05037___ydb 282 TAACCTTTGTAT--AGAAAAAACTAATGCGGAAACCGTCCCGTTCGCGGA 329
BSNT_00761___ 330 GCAGCCA---TGCTAA---------------------------------- 342
||..| ||||.|
BL05037___ydb 330 --AGGGAATGTGCTGAAGCTGATACGGTGCAAATCAGCCGAACAAAAGCT 377
BSNT_00761___ 342 -------------------------------------------------- 342
BL05037___ydb 378 TCAAGCATTCAGCGAGGCGCAGGCCAAATGGGCTCCGCTGCAAAACGTCA 427
BSNT_00761___ 342 -------------------------------------------------- 342
BL05037___ydb 428 GCGGATTCATCAGGCAGTGGGGCGGATGGATGGAAACAGAAGACGGGCCG 477
BSNT_00761___ 342 -------------------------------------------------- 342
BL05037___ydb 478 GAAGCCGTCGTCCTGGCGCTTTGGAAATCGAAGCACGATTATTTGAACTT 527
BSNT_00761___ 342 -------------------------------------------------- 342
BL05037___ydb 528 TATGGCGGAACATCATGATGAGATATATGAAAGAACGCATCAGAAAGGCA 577
BSNT_00761___ 342 -------------------------------------------------- 342
BL05037___ydb 578 CATTCGAATCCATCAACATTACGCTGTTTGAAGATCCTGCCGAGATATCT 627
BSNT_00761___ 342 -------------------------------------------------- 342
BL05037___ydb 628 GAAACGCTGCAGAACAATACGCCGGCTCCGGTACCGGAATGGACGGTAAT 677
BSNT_00761___ 342 ---------------------------------------- 342
BL05037___ydb 678 GGGCAGCGGACGATTGCGCGATCCACACTCTCTTTCGTGA 717
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