Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00709 and BL05029

See Amino acid alignment / Visit BSNT_00709 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:20
# Commandline: needle
#    -asequence dna-align/BSNT_00709___ycsE.1.5803.seq
#    -bsequence dna-align/BL05029___ycsE.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00709___ycsE-BL05029___ycsE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00709___ycsE-BL05029___ycsE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00709___ycsE
# 2: BL05029___ycsE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 776
# Identity:     572/776 (73.7%)
# Similarity:   572/776 (73.7%)
# Gaps:          46/776 ( 5.9%)
# Score: 2120.5
# 
#
#=======================================

BSNT_00709___      1 ATGTCTGT---TCAAAGA----GAAGATGTAGATATCAAGCTGATCGCAA     43
                     .||||.||   |||||||    |||    |.|||.|.|||||..|.||..
BL05029___ycs      1 GTGTCAGTCAGTCAAAGAAATCGAA----TCGATGTGAAGCTAGTAGCTC     46

BSNT_00709___     44 TTGATATGGATGGTACACTGCTGAACGACGAGCAGCTGATCTCGGATGAA     93
                     |.|||||||||||.||||||.|.||.|||||.||....||.||.||||||
BL05029___ycs     47 TGGATATGGATGGAACACTGTTAAATGACGAACAAACCATTTCTGATGAA     96

BSNT_00709___     94 AACCGCAAAGCCATTCGTGAAGCGGAGGATAAAGGTGTGTATGTGGTGAT    143
                     |||.|.|||||.|||...|||||.|||||.|||||.||.|||||.|||.|
BL05029___ycs     97 AACAGAAAAGCGATTAAAGAAGCTGAGGAAAAAGGGGTTTATGTCGTGCT    146

BSNT_00709___    144 CAGCACGGGCCGGACGCTGATGACGTGCCGGGAGCTGGCGGAATCGCTAA    193
                     .|||||.||.||||||||||||||||||||||||.|||||||.|||||..
BL05029___ycs    147 TAGCACCGGGCGGACGCTGATGACGTGCCGGGAGTTGGCGGAGTCGCTCG    196

BSNT_00709___    194 AGCTGTCATCCTTTCTAATCACGGCAAACGGCAGTGAAATTTGGGATTCG    243
                     |.|||||.||.|||.|.|||||||||||||||||||||||.|||||||||
BL05029___ycs    197 AACTGTCTTCTTTTTTGATCACGGCAAACGGCAGTGAAATCTGGGATTCG    246

BSNT_00709___    244 AATTTTAATTTGGTGGAACGGAAGCTGCTTCATACGGACCATATTCAAAT    293
                     ..|||.||..||||.||.||..|||||||||||.|.||.|||.|.|||||
BL05029___ycs    247 TCTTTCAACCTGGTCGAGCGCCAGCTGCTTCATCCCGATCATGTCCAAAT    296

BSNT_00709___    294 GATGTGGGATTTGCGGAATAAGCACAACACTAATTTCTGGGCTTCTACGG    343
                     |||||||||||||||.|||..|||||||||..||||||||||..|.|..|
BL05029___ycs    297 GATGTGGGATTTGCGCAATCTGCACAACACCGATTTCTGGGCCGCCAGTG    346

BSNT_00709___    344 TGAATAAAGTATGGAGAGGCGAGTTTCCGGAAAACATTACGGAT------    387
                     |..|||||||.|||||||||||||||||.||         ||||      
BL05029___ycs    347 TCGATAAAGTGTGGAGAGGCGAGTTTCCTGA---------GGATATACAA    387

BSNT_00709___    388 ---CATGAATGGCTCAAATTCGGCTTTGACATTGAGGATGACGATATCCG    434
                        .||||||||||.||||||||||||||.|||..|||||||||..||.|
BL05029___ycs    388 GCGTATGAATGGCTGAAATTCGGCTTTGATATTCCGGATGACGACGTCAG    437

BSNT_00709___    435 AAACGAAGTGCTTCAGGAGCTGAGAAAAAACAAAGAGCTCGAAATCACAA    484
                     ||||...||.||..|.|||||||.|||.||||||||..|.|||.||||.|
BL05029___ycs    438 AAACCGGGTCCTGGAAGAGCTGAAAAAGAACAAAGAATTGGAAGTCACCA    487

BSNT_00709___    485 ATTCAAGTCCGACAAACATTGAAGTCAACGCGCTTGGCATCAACAAAGCT    534
                     |||||||.|||||.||.|||||||||||.||..|.||.|||||.|||||.
BL05029___ycs    488 ATTCAAGCCCGACCAATATTGAAGTCAATGCCATCGGGATCAATAAAGCG    537

BSNT_00709___    535 GCAGCCCTTGCCAAGGT-TACGGAAAAA----CTCGGCATTACAATGGAG    579
                     ||.||..|.||.||.|| |.||     |    ||||||.||||.|||||.
BL05029___ycs    538 GCCGCTTTGGCAAAAGTGTGCG-----AGCGCCTCGGCTTTACGATGGAA    582

BSNT_00709___    580 AATGTGATGGCGATGGGCGACAGCCTTAATGACATTGCGATGATCAAAGA    629
                     .|||||||||||.|.||.|||||..|.|||||.||.||.|||||||||||
BL05029___ycs    583 CATGTGATGGCGGTCGGAGACAGTTTAAATGATATCGCCATGATCAAAGA    632

BSNT_00709___    630 AGCGGGTCTTGGCGTCGCAATGGGCAATGCGCAAGACATCGTAAAAGAAA    679
                     |||.|||.|.|||||.||.|||||.||.||.||.||.|||||.|||||||
BL05029___ycs    633 AGCCGGTTTAGGCGTTGCCATGGGGAACGCCCAGGAAATCGTCAAAGAAA    682

BSNT_00709___    680 CGGCTGATTATATCACGGATACAAATATTGAGGATGGTGTCGCTAAAGCG    729
                     |.||.||.|..||.||.|||.|.|||||.||..|.||.|||||.||.|||
BL05029___ycs    683 CCGCGGACTGGATTACAGATTCCAATATCGAACACGGAGTCGCAAAGGCG    732

BSNT_00709___    730 ATTCGCCATTGGGTA-----CTATAA    750
                     ||..|.|||||||||     |||.  
BL05029___ycs    733 ATCAGGCATTGGGTATTGTCCTAG--    756


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00709 and BL05029

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
