Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00062 and BL05002

See Amino acid alignment / Visit BSNT_00062 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:43
# Commandline: needle
#    -asequence dna-align/BSNT_00062___yaaR.1.5803.seq
#    -bsequence dna-align/BL05002___yaaR.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00062___yaaR-BL05002___yaaR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00062___yaaR-BL05002___yaaR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00062___yaaR
# 2: BL05002___yaaR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 463
# Identity:     311/463 (67.2%)
# Similarity:   311/463 (67.2%)
# Gaps:          44/463 ( 9.5%)
# Score: 977.5
# 
#
#=======================================

BSNT_00062___      1 GTGAAAATTAATAAAGATATACGTACATTTATAGATAATAAGCAGATTCC     50
                     .|||||||.|.|.||||..|.||||||.|.|||||.||..||||||.|||
BL05002___yaa      1 ATGAAAATAAGTCAAGAACTGCGTACAATGATAGAGAAACAGCAGACTCC     50

BSNT_00062___     51 CTCT-------GTGAAAACATCTGAGATCACGGCATCGTTTAA----AAC     89
                     ..||       |.|||||..|.|       |.||.||.|||||    ||.
BL05002___yaa     51 GCCTGCAAGAGGAGAAAATGTTT-------CTGCTTCATTTAAAGAGAAG     93

BSNT_00062___     90 ATCAATGGAAAACCAAAGCAGCAAAATGAAGC------TTGATCAGCTTA    133
                     ||.|||    |..||||||.||      ||||      ||||.|||||.|
BL05002___yaa     94 ATGAAT----ATACAAAGCGGC------AAGCTTCGAGTTGAACAGCTGA    133

BSNT_00062___    134 CCAGGCTGTTATCTGATATAGAAGCATTCGGAAAAAGGCTAACGAAATCT    183
                     |.|.|||.|||.|.|||||.|||||.|||||||||.|.||..|.|||||.
BL05002___yaa    134 CAATGCTTTTAACAGATATTGAAGCGTTCGGAAAACGCCTCTCAAAATCG    183

BSNT_00062___    184 CGGAATTTTAAAGACTTAGCGAGATTTAAAGGACTTG-TGAAACGTTTTG    232
                     .|.||.||.|||||.||.||.||.||.||||| |||| |.|||||.||||
BL05002___yaa    184 AGAAACTTCAAAGATTTGGCCAGGTTCAAAGG-CTTGATCAAACGATTTG    232

BSNT_00062___    233 TCAAAGAAGCTGTGGACAGCGGCCTTTCACATGAAACATCGAAAAGCTTT    282
                     |.|||||..|.||.||.|.|||.||..|....||.|..||.|.||||||.
BL05002___yaa    233 TAAAAGAGACCGTTGAAAACGGTCTGACGGTGGAGAATTCAAGAAGCTTC    282

BSNT_00062___    283 GACCTTTACGGGAACAGCAGAACGCTGGGACTTGTGAAAGAAATAGATGA    332
                     ||.||.|||||.||||||.|.||..|..|..|||||||||||.|.||.||
BL05002___yaa    283 GATCTGTACGGAAACAGCCGGACATTAAGCATTGTGAAAGAACTGGACGA    332

BSNT_00062___    333 CAAA--TTGATACAGCTTACGGAAGAGATGATGGATCAGGAAAAACCGGC    380
                      |||  ||| |.||..|.||.||.||..|.||||||||.||||||.|..|
BL05002___yaa    333 -AAAGCTTG-TGCAATTAACTGAGGATCTTATGGATCAAGAAAAATCCTC    380

BSNT_00062___    381 AATTGA--TTTGCTGGAGCGTATTGGCGAAATAAAAGGTTTATTAATTAA    428
                     .||.||  |||  ||||.||.||||||||||||||.||||||.|.||.||
BL05002___yaa    381 TATCGAACTTT--TGGAACGCATTGGCGAAATAAAGGGTTTACTGATAAA    428

BSNT_00062___    429 CCTTTACACATAG    441
                     |||||||||||||
BL05002___yaa    429 CCTTTACACATAG    441


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