Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04060 and BL04043

See Amino acid alignment / Visit BSNT_04060 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:06
# Commandline: needle
#    -asequence dna-align/BSNT_04060___rplU.1.5803.seq
#    -bsequence dna-align/BL04043___rplU.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04060___rplU-BL04043___rplU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04060___rplU-BL04043___rplU.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04060___rplU
# 2: BL04043___rplU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 311
# Identity:     269/311 (86.5%)
# Similarity:   269/311 (86.5%)
# Gaps:           4/311 ( 1.3%)
# Score: 1153.0
# 
#
#=======================================

BSNT_04060___      1 ATGTACGCAATCATTAAAACAGGCGGTAAACAAATCAAAGTTGAAGAAGG     50
                     |||||||||||.|||.||||||||||.|||||||||||||||||||||||
BL04043___rpl      1 ATGTACGCAATTATTCAAACAGGCGGAAAACAAATCAAAGTTGAAGAAGG     50

BSNT_04060___     51 CCAAACTGTTTACATCGAAAAACTTGCTGCTGAAGCAGGTGAAACAGTTA    100
                     |||||||||.|||.|||||||.||||||||||||||.||.||||||||||
BL04043___rpl     51 CCAAACTGTATACGTCGAAAAGCTTGCTGCTGAAGCCGGCGAAACAGTTA    100

BSNT_04060___    101 CTTTTGAAGACGTTTTGTTTGTTGGCGGAGACAACGTGAAAGTCGGCAAC    150
                     |||||||..||||.||||||||.|||||.||.||.||.|||||.||||.|
BL04043___rpl    101 CTTTTGACAACGTATTGTTTGTCGGCGGTGAAAATGTTAAAGTTGGCAGC    150

BSNT_04060___    151 CCTACAGTTGAAGGCGCAACAGTAAC-GGCTAAAGTTGAAAAACAAGGCC    199
                     |||||.||||||||.||.||.||||| ||| |||||||||||||||||||
BL04043___rpl    151 CCTACGGTTGAAGGTGCTACGGTAACAGGC-AAAGTTGAAAAACAAGGCC    199

BSNT_04060___    200 GCGCGAAAAAAATCACTGT-TTTCAGATACAAACCAAAGAAAAACGTTCA    248
                     ||||.||||||||.||.|| |||.|| |||||.||.|||||||||...||
BL04043___rpl    200 GCGCTAAAAAAATTACCGTATTTAAG-TACAAGCCGAAGAAAAACCAACA    248

BSNT_04060___    249 TAAAAAACAAGGTCATCGTCAGCCTTACACTAAAGTGACGATCGAAAAAA    298
                     .||||||||||||||||||||.||||||||||||||....||||||||||
BL04043___rpl    249 CAAAAAACAAGGTCATCGTCAACCTTACACTAAAGTTGTTATCGAAAAAA    298

BSNT_04060___    299 TCAACGCGTAA    309
                     |||||||.|||
BL04043___rpl    299 TCAACGCTTAA    309


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