Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_05581 and BL04040

See Amino acid alignment / Visit BSNT_05581 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:42
# Commandline: needle
#    -asequence dna-align/BSNT_05581___ywnH.1.5803.seq
#    -bsequence dna-align/BL04040___ywnH.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05581___ywnH-BL04040___ywnH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05581___ywnH-BL04040___ywnH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05581___ywnH
# 2: BL04040___ywnH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 523
# Identity:     353/523 (67.5%)
# Similarity:   353/523 (67.5%)
# Gaps:          50/523 ( 9.6%)
# Score: 1143.0
# 
#
#=======================================

BSNT_05581___      1 ATGAACATGACATTGCGCCTTGCTGAAC-ATAG---AGACTTGGAGGCTG     46
                           ||||.|||.||..|.||    | ||.|   ||||.|....||.|
BL04040___ywn      1 ------ATGAAATTACGAATCGC----CAATCGGGAAGACCTTCCCGCAG     40

BSNT_05581___     47 TTGTGGCGATTTATAATTCAACGATTGCTTCTCGAATGGTAACAGCCGAT     96
                     |.||.|..|||||.||.||.||.|||||.||.||||||||.||.||.|||
BL04040___ywn     41 TAGTCGATATTTACAACTCCACCATTGCGTCGCGAATGGTGACGGCAGAT     90

BSNT_05581___     97 ACCGAACCGGTAACTCCTGAAGACCGGATGGAATGGTTTTTAGGACATAC    146
                     ||.|||||.||.||.||||||||..||.||.|.||||||||..|.|||||
BL04040___ywn     91 ACAGAACCCGTCACGCCTGAAGAAAGGCTGAACTGGTTTTTGAGCCATAC    140

BSNT_05581___    147 AGAGGCACGTCCGCTCTATGTGGCCGAGGACG-AAAACGG--AAACGTCG    193
                     .||.|.|.|.||.||.|||.|.||.||..|.| |||||||  .|.|||| 
BL04040___ywn    141 CGAAGAAAGGCCTCTTTATATTGCAGAAAATGAAAAACGGGATATCGTC-    189

BSNT_05581___    194 CTGCCTGGATCAGCTTTGAAACATTTTATGGAAGGCCAGCCTATAATAAA    243
                       |.||||||||||||||||.|||||||.||.||.||.|||||....|||
BL04040___ywn    190 --GGCTGGATCAGCTTTGAATCATTTTACGGGAGACCCGCCTACGCCAAA    237

BSNT_05581___    244 ACAGCGGAGGTCAGCATATACATTGACGAAG--CATGCCGCGGCAAAGGC    291
                     ||.||.||.||||||||.|||.||.|.||||  ||  ||||||||||||.
BL04040___ywn    238 ACCGCCGAAGTCAGCATTTACCTTCATGAAGACCA--CCGCGGCAAAGGG    285

BSNT_05581___    292 GTTGGATCATATT----TGCTTCAGGAAGCGCTCCGCAT-----TGCGCC    332
                     |..||.||    |    |||||.|..|||||||     |     |||.||
BL04040___ywn    286 GCGGGTTC----TGCGGTGCTTGAAAAAGCGCT-----TGAAGCTGCTCC    326

BSNT_05581___    333 GGATCTTGGCATCCGCTCACTTATGGCCTTCATTTTCGGGCATAATAAAC    382
                     ..|.|||||.|||||.||..|.|||||.||.|||||||..||.|||.|||
BL04040___ywn    327 AAAGCTTGGAATCCGTTCTTTAATGGCGTTTATTTTCGCTCACAATGAAC    376

BSNT_05581___    383 CAAGCCTGAAGCTGTTTGAAAAGCACGGGTTTGCAGAATGGGGACTATTC    432
                     |.|||.|||||||.||..||||..||||.||..|.||.|||||||..||.
BL04040___ywn    377 CGAGCATGAAGCTTTTCAAAAAATACGGCTTCACCGAGTGGGGACACTTT    426

BSNT_05581___    433 CCCGGCATCGCCGAAATGGACGGGAAAAGATACGATTTAAAAATTTTAGG    482
                     |||||.||||||||.||||||||.|...|.|||||.||||||||.|||||
BL04040___ywn    427 CCCGGAATCGCCGAGATGGACGGAATCCGGTACGACTTAAAAATATTAGG    476

BSNT_05581___    483 GAGAGAGCTTTCATGA-------    498
                     .|.||| .||..||||       
BL04040___ywn    477 AAAAGA-ATTGAATGAAGCCTGA    498


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.