Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05587 and BL04038

See Amino acid alignment / Visit BSNT_05587 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:42
# Commandline: needle
#    -asequence dna-align/BSNT_05587___ywnC.1.5803.seq
#    -bsequence dna-align/BL04038___ywnC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05587___ywnC-BL04038___ywnC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05587___ywnC-BL04038___ywnC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05587___ywnC
# 2: BL04038___ywnC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 456
# Identity:     244/456 (53.5%)
# Similarity:   244/456 (53.5%)
# Gaps:         135/456 (29.6%)
# Score: 548.0
# 
#
#=======================================

BSNT_05587___      1 ------ATGAATCCTGAAACAATGAACAAAACCCTCATCA-GC-ATTTCG     42
                           ||||   |.||.|..|||||.|||.|.||  |.| || |||.|.
BL04038___ywn      1 TTGGAAATGA---CAGACAGCATGAAAAAATCGCT--TGATGCGATTGCA     45

BSNT_05587___     43 AAATGGGGAAAAGCTACAGGCATTTTATTTATTATTAT----GGGCGCAA     88
                     ||||||||||||...||.||..||   |||||.|||||    ||..|||.
BL04038___ywn     46 AAATGGGGAAAAATAACCGGAGTT---TTTATGATTATCGCCGGAGGCAT     92

BSNT_05587___     89 TTACCGCGCTTTCAGGCGCG----TTCTTT-TTTCTAATCGGTGCCGTGC    133
                     .||...|..|||      ||    |||||| .||.|.|||||.||||..|
BL04038___ywn     93 CTATGCCTTTTT------CGGAATTTCTTTGCTTATCATCGGAGCCGCTC    136

BSNT_05587___    134 CAGGCGTACTGCAAATTATTTCCGG----TATCTTTTTGATGAGGTCAGC    179
                     ||||.||.|||...|||.||||.||    ||||||.||         |..
BL04038___ywn    137 CAGGTGTGCTGATGATTTTTTCAGGAATCTATCTTCTT---------AAA    177

BSNT_05587___    180 TAGGGAAGCAGGCC-------AAATGGCTGA--ACA-----CAATAGCGG    215
                     |.||.||  |.|||       |||||..|.|  |||     |||    |.
BL04038___ywn    178 TCGGCAA--ACGCCGCTCAGAAAATGAGTCATGACATGCCGCAA----GA    221

BSNT_05587___    216 ACAGTCTGAAGACTTAATGCTGGAGAATTACGCGAAATTCGTAAAGATGC    265
                     ||.|..|||||.||   ||||.||.||.||.|.|||.||      .|||.
BL04038___ywn    222 ACCGCATGAAGCCT---TGCTTGATAACTATGTGAAGTT------TATGA    262

BSNT_05587___    266 AAGGG--ATTTATTT------GATCGTAAGCATTGCTGTATC--CATTCT    305
                     ||.||  ||||.|.|      .||||  |..|||| || |||  ||||.|
BL04038___ywn    263 AATGGCAATTTTTCTACTTACTATCG--AATATTG-TG-ATCTTCATTTT    308

BSNT_05587___    306 -TGCGATTATCG------CCTTCTTCATCTTTTTAATGCTTGGGATTGCT    348
                      ||| ||.||||      .||||.|.|||||||||               
BL04038___ywn    309 ATGC-ATAATCGTTTTTTTCTTCCTGATCTTTTTA---------------    342

BSNT_05587___    349 GATGGCCTTTTC-AG-CGATACGTACAGC---------ACTTATTAA---    384
                        ||  |.||| || ||||.|.||||||         .|||||||.   
BL04038___ywn    343 ---GG--TGTTCTAGCCGATTCTTACAGCGGGTATGATCCTTATTATTAC    387

BSNT_05587___    384 ------    384
                           
BL04038___ywn    388 GAATGA    393


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