Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05587 and BL04038
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:42
# Commandline: needle
# -asequence dna-align/BSNT_05587___ywnC.1.5803.seq
# -bsequence dna-align/BL04038___ywnC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05587___ywnC-BL04038___ywnC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05587___ywnC-BL04038___ywnC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05587___ywnC
# 2: BL04038___ywnC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 456
# Identity: 244/456 (53.5%)
# Similarity: 244/456 (53.5%)
# Gaps: 135/456 (29.6%)
# Score: 548.0
#
#
#=======================================
BSNT_05587___ 1 ------ATGAATCCTGAAACAATGAACAAAACCCTCATCA-GC-ATTTCG 42
|||| |.||.|..|||||.|||.|.|| |.| || |||.|.
BL04038___ywn 1 TTGGAAATGA---CAGACAGCATGAAAAAATCGCT--TGATGCGATTGCA 45
BSNT_05587___ 43 AAATGGGGAAAAGCTACAGGCATTTTATTTATTATTAT----GGGCGCAA 88
||||||||||||...||.||..|| |||||.||||| ||..|||.
BL04038___ywn 46 AAATGGGGAAAAATAACCGGAGTT---TTTATGATTATCGCCGGAGGCAT 92
BSNT_05587___ 89 TTACCGCGCTTTCAGGCGCG----TTCTTT-TTTCTAATCGGTGCCGTGC 133
.||...|..||| || |||||| .||.|.|||||.||||..|
BL04038___ywn 93 CTATGCCTTTTT------CGGAATTTCTTTGCTTATCATCGGAGCCGCTC 136
BSNT_05587___ 134 CAGGCGTACTGCAAATTATTTCCGG----TATCTTTTTGATGAGGTCAGC 179
||||.||.|||...|||.||||.|| ||||||.|| |..
BL04038___ywn 137 CAGGTGTGCTGATGATTTTTTCAGGAATCTATCTTCTT---------AAA 177
BSNT_05587___ 180 TAGGGAAGCAGGCC-------AAATGGCTGA--ACA-----CAATAGCGG 215
|.||.|| |.||| |||||..|.| ||| ||| |.
BL04038___ywn 178 TCGGCAA--ACGCCGCTCAGAAAATGAGTCATGACATGCCGCAA----GA 221
BSNT_05587___ 216 ACAGTCTGAAGACTTAATGCTGGAGAATTACGCGAAATTCGTAAAGATGC 265
||.|..|||||.|| ||||.||.||.||.|.|||.|| .|||.
BL04038___ywn 222 ACCGCATGAAGCCT---TGCTTGATAACTATGTGAAGTT------TATGA 262
BSNT_05587___ 266 AAGGG--ATTTATTT------GATCGTAAGCATTGCTGTATC--CATTCT 305
||.|| ||||.|.| .|||| |..|||| || ||| ||||.|
BL04038___ywn 263 AATGGCAATTTTTCTACTTACTATCG--AATATTG-TG-ATCTTCATTTT 308
BSNT_05587___ 306 -TGCGATTATCG------CCTTCTTCATCTTTTTAATGCTTGGGATTGCT 348
||| ||.|||| .||||.|.|||||||||
BL04038___ywn 309 ATGC-ATAATCGTTTTTTTCTTCCTGATCTTTTTA--------------- 342
BSNT_05587___ 349 GATGGCCTTTTC-AG-CGATACGTACAGC---------ACTTATTAA--- 384
|| |.||| || ||||.|.|||||| .|||||||.
BL04038___ywn 343 ---GG--TGTTCTAGCCGATTCTTACAGCGGGTATGATCCTTATTATTAC 387
BSNT_05587___ 384 ------ 384
BL04038___ywn 388 GAATGA 393
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