Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01794 and BL04034
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:17
# Commandline: needle
# -asequence dna-align/BSNT_01794___yhjM.1.5803.seq
# -bsequence dna-align/BL04034___ntdR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01794___yhjM-BL04034___ntdR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01794___yhjM-BL04034___ntdR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01794___yhjM
# 2: BL04034___ntdR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1073
# Identity: 666/1073 (62.1%)
# Similarity: 666/1073 (62.1%)
# Gaps: 166/1073 (15.5%)
# Score: 1732.0
#
#
#=======================================
BSNT_01794___ 1 ATGCCTACAATTGATGAAATAGCAAAATTATGCAATGTGTCTAAAACCAC 50
||||||||.|||||.|||||.|||||||||.|.||||||||.|||||.||
BL04034___ntd 1 ATGCCTACGATTGACGAAATTGCAAAATTAAGTAATGTGTCAAAAACAAC 50
BSNT_01794___ 51 AGTGTCAAGAGTATTGAATAATCATCCGTATGTGTCGAAAGAAAAAAGAG 100
.||.|||||||||.||||..|||||||.|||||.||..||||||||||..
BL04034___ntd 51 TGTTTCAAGAGTACTGAACGATCATCCCTATGTATCTGAAGAAAAAAGGA 100
BSNT_01794___ 101 ATATGATCTTAAAGGCAATTAACG---AACTTGACTACACTCCCAATTA- 146
|...|.|.|| ||.|.|.|.|| ||.|.||||||| ||||.|..|
BL04034___ntd 101 AGCGGGTTTT---GGAAGTCATCGAAAAATTGGACTACA-TCCCGAACAC 146
BSNT_01794___ 147 -TTTAGCTCGGAATTTTAGGAGAAATAAGACACAAACGATAGCTTTATCG 195
|.| ||.||.||..|.|| ||...||| ||||||| .|||.|||
BL04034___ntd 147 GTCT-GCACGAAAGCTCAG-----ATCCAACA-AAACGAT--GTTTCTCG 187
BSNT_01794___ 196 GTTCCGAGTATC-------------GACCATCCATTTTTTGCTCAATTAA 232
.|||.|| |||||.||.||.||.|||||..|.|
BL04034___ntd 188 -----CAGTGTCTGTCCCACACGCGGACCACCCCTTCTTCGCTCAGCTTA 232
BSNT_01794___ 233 TAAAAGGGGTCTCTC--ATGAAGCACTGTTTAAGA--ATTACAAGGTAAT 278
|.|| |..|.|.|| .||||||.||| .||.| |.|||||.||.||
BL04034___ntd 233 TGAA--GCATATGTCCGCTGAAGCGCTG--AAACACCAATACAAAGTCAT 278
BSNT_01794___ 279 TGTATTTCAGACCTTTTATGACAAACAGACAGAGCTAGAATTATTAGAGT 328
|||.||||||||.||||||.|.||.||||..||.||..||.||.|.|||.
BL04034___ntd 279 TGTGTTTCAGACGTTTTATCAAAAGCAGAATGAACTGAAAGTACTGGAGC 328
BSNT_01794___ 329 TATTGAAACATAAAGAAGTGGATGGTATTATTCT-TGGAACTTTAGAAAA 377
|..|.||....||||||||.||.||..||||.|| ||.|.|.|| |||||
BL04034___ntd 329 TGCTCAAGAGGAAAGAAGTCGACGGCGTTATGCTATGCAGCCTT-GAAAA 377
BSNT_01794___ 378 TGAATGGGATCAGATATCCCCT------TTCTTAAAGTATGGTCCTATC- 420
||||||||| |||.||| |.|.|.||.||.||||| |
BL04034___ntd 378 TGAATGGGA--AGACATC----AAAAAATACGTCAAATACGGTCC---CG 418
BSNT_01794___ 421 TTATTATG--TAATGAATATCATCACTC---AGCGGACATCACGATAATT 465
|..||||| .||||||| || |||.| |||||||.|..||.|.||.
BL04034___ntd 419 TGGTTATGGCAAATGAAT-TC--CACGCCGAAGCGGACGTGCCGGTGATC 465
BSNT_01794___ 466 GGGTATGATGAATTTGAAGCTACATACATGGG---GGTAGTACATTTAAT 512
.|.|||||.|||||.|||||...|||.|..|| || || |.|||.||
BL04034___ntd 466 TGCTATGACGAATTCGAAGCCGGATATAAAGGAACGG-AG--CTTTTTAT 512
BSNT_01794___ 513 TGAAAGAGGGCATAAAAAAATTGGGTTTTGTTTTGATACTCCATATAGCG 562
|.|||.|||||||.|...|||.|..|||||.|.|||.||...|.|.|||.
BL04034___ntd 513 TCAAAAAGGGCATCATTTAATGGCCTTTTGCTGTGACACGATACACAGCA 562
BSNT_01794___ 563 AAGCTCA-ATGTCAGAGGAAAG-AGGGTTATTTGAAAGCTT-------TA 603
|.||.|| || |..|||.|||| |||||| |.|||||||.| |.
BL04034___ntd 563 AGGCCCAGAT-TATGAGAAAAGAAGGGTT-TATGAAAGCATTGTCTGATG 610
BSNT_01794___ 604 CAAGATTACGATTTACATCATAGAAGCGAATGGATATTCGGCGAAATGTT 653
||.|.||.|| |||.|| ..||||| |||||.|||.||.|....||
BL04034___ntd 611 CAGGTTTGCG-TTTCCA--GGAGAAG----TGGATGTTCAGCCACGCATT 653
BSNT_01794___ 654 TAATATCGAGGATGGCTTTCGTGTTTTTCATAAGAT--AAAGGATCT--- 698
||..||..|.||.|||||.||..||.|..|..|||| |.|..||.|
BL04034___ntd 654 TACCATTCATGACGGCTTCCGCATTATGGACCAGATCCACAACATGTCCG 703
BSNT_01794___ 699 -AAAGGACAGACCCTCAGCAATATTTACAGGAAATGATCAAGTCGCCGCA 747
|||| |.|||| ||.||.|||||.|||||.||.|||||.||||||
BL04034___ntd 704 AAAAG--CCGACC----GCCATTTTTACGGGAAACGACCAAGTGGCCGCA 747
BSNT_01794___ 748 GGGATTATTAAACAGG---CGATGA-----AAAATGGCTTTAAAGTTCCA 789
||.||||||||| ||| |||| | ||.||| ||||.|||
BL04034___ntd 748 GGAATTATTAAA-AGGGCCCGAT-ATTATCAATATG------AAGTGCCA 789
BSNT_01794___ 790 GAAG--ACTTAGCTGTAATTGGTTTTGACAACCAATTGATCTGCCAAGT- 836
||| .||| ||.||..||||.|.||||||.||||.||||||..|.||
BL04034___ntd 790 -AAGCAGCTT-GCAGTGCTTGGATATGACAATCAATCGATCTGTGAGGTG 837
BSNT_01794___ 837 --CGTTACTCCGACCATAACAACAATTGATATCCCCGTAATAGAATTAGG 884
|| .||||...||.||.|||||.|||||.||.||...|||..|.|.
BL04034___ntd 838 ACCG---ATCCGGAAATCACGACAATCGATATACCTGTTGAAGAGCTGGC 884
BSNT_01794___ 885 TCAACAGGC----TGTG---TTGAAAATCATC-GAGTCCATTTCGGGTAA 926
||||.|.|| |||| |.|.|||.|.|| ||.| |||.||
BL04034___ntd 885 TCAAAAAGCCGTATGTGCAATGGTAAACCTTCTGAAT-------GGGGAA 927
BSNT_01794___ 927 TGCCACTTTAAACAGAAGAA--TTATTAAACTGCCAAC-------AAAGC 967
.||..||| |||||.|.| |..|.|.||||.|..| |||
BL04034___ntd 928 AGCGGCTT---ACAGAGGGATGTCGTGACACTGTCCCCTGCATTAAAA-- 972
BSNT_01794___ 968 TTATTATAAGAGAATCAACGTAA 990
||||||.||||....||.
BL04034___ntd 973 -----ATAAGACAATCTGTTTAG 990
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