Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00313 and BL04015
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:58
# Commandline: needle
# -asequence dna-align/BSNT_00313___ybbB.1.5803.seq
# -bsequence dna-align/BL04015___ybbB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00313___ybbB-BL04015___ybbB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00313___ybbB-BL04015___ybbB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00313___ybbB
# 2: BL04015___ybbB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1737
# Identity: 1056/1737 (60.8%)
# Similarity: 1056/1737 (60.8%)
# Gaps: 288/1737 (16.6%)
# Score: 2932.5
#
#
#=======================================
BSNT_00313___ 1 GTGCAAAATGCA-----GTGATT--TATCAACCGGTACAAATTGAATATC 43
|||.| .|.||| ||||..|...|.||||||||..||.
BL04015___ybb 1 -------ATGAAATCTTCTTATTTCTATCGTCTCTTGCAAATTGATCATA 43
BSNT_00313___ 44 TAAAAAAGACAAGTGATCTCTTCTC----AGAACAGCAATTAGCCGATTC 89
|||.||||.|..|.||||| || .||||||||..|.||.||.||
BL04015___ybb 44 TAAGAAAGCCCGGCGATCT----TCCGGATGAACAGCAGCTCGCAGACTC 89
BSNT_00313___ 90 ATTCGTGCTGATTTTTCATTTAAAAGGAAACGGCTATATTTCGATCGGA- 138
.|||||..||||.||||||||.||.||..|.|||...| ||||| |
BL04015___ybb 90 TTTCGTTTTGATCTTTCATTTGAAGGGTGAAGGCAGAA--TCGAT---AT 134
BSNT_00313___ 139 ACAAACACCA-----ATCCTTTGCAAAAAAAGACACTTTATGTTTGTCCG 183
||||.||.|| | ||..|.||||||.|.||.||.|||.|...||||
BL04015___ybb 135 ACAAGCATCAGGCAGA-CCCCTCCAAAAAGAAACGCTGTATATCGTTCCG 183
BSNT_00313___ 184 CCTAACGAGACCTTTG--------GCTTTACGCCAG-------CAGCCGA 218
|||.|.||.||.||.| |||| ||.||| ||||
BL04015___ybb 184 CCTTATGAAACATTCGGAATCACAGCTT--CGTCAGAGGAAATCAGC--- 228
BSNT_00313___ 219 TGGACATATAGATGCCTGTCTGATCAGGCTTCAAAGCTA----TATCAAG 264
|..|.|||.||||||||.||...||| |||.|||
BL04015___ybb 229 -------------GTTTATCTCATCAGGCTGCAGCCCTACTGCTATGAAG 265
BSNT_00313___ 265 GAAGCCGGC--------CAAGATATTTTCACACCGTGCACAGAATCGGA- 305
...||||.| |||| ||.| |||.||..|.||
BL04015___ybb 266 ACCGCCGCCTGACGCTTCAAG-------CAGA-----CACCGACCCTGAC 303
BSNT_00313___ 306 --ATTAGCCAAACTGAAGCTTATAAATGTTTCA-CATATCGAAAATCTTG 352
.||..||.|.||..||.|.||.|||| |.|| |.|.|||.||||||.|
BL04015___ybb 304 GCTTTTTCCGACCTTCAGATGATGAATG-TCCATCCTGTCGGAAATCTGG 352
BSNT_00313___ 353 CCGTCCGGCTTCAAGAGCTTGCCGCACTATGGAATGAATCGTCTCAGCTT 402
||..|||.|||||.||.|||.||||..|||||...|.||| .|||||
BL04015___ybb 353 CCTCCCGTCTTCAGGAACTTTCCGCCTTATGGCCGGCATC--TTCAGC-- 398
BSNT_00313___ 403 TCTC----AGCTAAAATGTGGGATTGAAGTACAAAGC------------- 435
.||| ||||.||||| |.||||
BL04015___ybb 399 GCTCCAGGAGCTGAAATG-------------CCAAGCAGATCTGCAGCAG 435
BSNT_00313___ 436 CTGATTTATGACCTCTTTACTGCCAGTTTATCTGA-TCAAACGGATACAC 484
||..|.||.||..|||.|.|.|||| |.|||| |||..|.|| |.||
BL04015___ybb 436 CTTCTGTACGATATCTATTCGGCCA----AACTGACTCATCCCGA-AAAC 480
BSNT_00313___ 485 A----TTCAGCAATCGAAAAAACAAAACACTATATCGAAACCCATGCCGA 530
| .|||||.||.|.|||||||||..|.|||||.||....|||.|.||
BL04015___ybb 481 ACCGCATCAGCCATAGGAAAAACAAAGGAGTATATTGAGGAGCATTCAGA 530
BSNT_00313___ 531 TACAAAAATCACGCTTGCCCAGCTGTCGCAAATGGCAGGAATCAGTGCCA 580
|.||.|..|.|||||||..||.||..||||||||||.||||||||.||.|
BL04015___ybb 531 TGCACACCTGACGCTTGATCAACTCGCGCAAATGGCCGGAATCAGCGCGA 580
BSNT_00313___ 581 AACACTACAGTGAAAGCTTTAAAAA-ATGGACAGGACAGAGCGTAACAGA 629
|.||||||||.|||||.||.||||| .||.|| ||.||.|||||.|||||
BL04015___ybb 581 AGCACTACAGCGAAAGGTTCAAAAAGCTGTAC-GGTCAAAGCGTGACAGA 629
BSNT_00313___ 630 ATTTATTACGAAAACACGAATCACAAAGGCAAAACTGCTCATGGCAAAAT 679
.|||||.||..|.||.||.||.||.||.||.||.|.|||.|||||||||.
BL04015___ybb 630 GTTTATCACTGAGACGCGGATGACGAAAGCGAAGCAGCTGATGGCAAAAG 679
BSNT_00313___ 680 CAAACTGCAAATTGAAAGAAATCGCACACCAAACCGGTTATCAAGATGAA 729
|.|.||.|||..|||..|||||..||..|||||.|||.|||||.||||||
BL04015___ybb 680 CGAGCTACAAGCTGAGGGAAATTTCAAGCCAAATCGGATATCAGGATGAA 729
BSNT_00313___ 730 TTTTATTTCAGCAGAATCTTTAAAAAATATACAGGCTGTTCACCTACAAG 779
||||||||||||||.|..|||||.||..|||||||||..||.||.||...
BL04015___ybb 730 TTTTATTTCAGCAGGACGTTTAAGAAGCATACAGGCTTATCCCCGACCGT 779
BSNT_00313___ 780 CTATATGAAAAAA---CGCCGAAAGAAAATCGCCGCATACG----GAAGG 822
.|||||||||||| |||.||||| .|.||.||.|||| |||
BL04015___ybb 780 TTATATGAAAAAAAGGCGCAGAAAG---CTGGCTGCCTACGGCCAGAA-- 824
BSNT_00313___ 823 GGCACAATGGGCCATCTCATCCCCCTTCACCACATACCTTTTGCGGCCGC 872
|||.||.||.||.||.||.||.|||||||.|||.||||..||.||..|
BL04015___ybb 825 --CACGATCGGACAGCTGATACCGCTTCACCTCATTCCTTACGCCGCTTC 872
BSNT_00313___ 873 TCTGCATCCAAAATGGACGTCTTACTACTATCAGCATTATTCGACAGATA 922
.||||||||.||.|||||.||.||.||||||.|||||||..||.||||||
BL04015___ybb 873 CCTGCATCCGAAGTGGACATCATATTACTATAAGCATTACGCGGCAGATA 922
BSNT_00313___ 923 TACCCGTCCAGCTCAGTGCATACCGGTTTAATGAAAAGTGGGAAGAAAAC 972
|.||.|||||.||.||.||||||||.|||.|.||...|||||||||||||
BL04015___ybb 923 TTCCGGTCCATCTGAGCGCATACCGCTTTCACGAGCCGTGGGAAGAAAAC 972
BSNT_00313___ 973 CTGTACACGTTATCACAGGCAGAACCAGATGTGATTGTCAGCATGGATTC 1022
|||...||.||.|||..|||.||.||.||..|.|||.||||||||||...
BL04015___ybb 973 CTGCGGACATTGTCATCGGCTGACCCGGAGCTCATTATCAGCATGGACAG 1022
BSNT_00313___ 1023 TATTTCTCCAGAAGAAC---AAGATCGCCTGAATCGCATCGCAGAAGTCA 1069
..|.||||..||.|||| ||.|.|.|| |.||| |||||.||.|||.
BL04015___ybb 1023 CGTGTCTCACGAGGAACGGGAACAGCTCC--AGTCG-ATCGCGGATGTCT 1069
BSNT_00313___ 1070 TGTACCTT----CCTTCAGAAGAAAGCTGGAGAACCCACTTTCTGCAAAC 1115
| ||| ||||||.|.|||...|||||.|..||.|||.|||..||
BL04015___ybb 1070 T----CTTTTTGCCTTCACAGGAACAATGGAGGAGGCATTTTATGCTGAC 1115
BSNT_00313___ 1116 TGC--CTCATTTTTAAAGGAGGAGTCCGAAGCAGA-------AAAGTGGC 1156
.|| |.||||| |||.|| .|||||.|| ||| ||||
BL04015___ybb 1116 CGCATCCCATTT-----GGACGA---AGAAGCGGAGGCTCACAAA-TGGC 1156
BSNT_00313___ 1157 TAGCGGATTATGACCAGC---------AGACAACAGCCGCCAAAAAAACA 1197
| ||.| |.|.|||||| ||| ||||.|||.|..|.
BL04015___ybb 1157 T-GCTG--TCTTACCAGCGTCTCACCGAGA------CCGCGAAAGAGGCG 1197
BSNT_00313___ 1198 CTTCAACACGTTCAAGGGCTGCG-----------TTTTCTCTTTTTGAGG 1236
|||.|.| ||.| ||||| |||| |.||||||.|.
BL04015___ybb 1198 CTTTATC-CGAT------CTGCGGACGCCGAAGCTTTT-TGTTTTTGCGC 1239
BSNT_00313___ 1237 CTGCATAAGCAAAACTTCTATCTGGCACATAACCGAAGTGTCCGCGAAGT 1286
.|||||||.||..|..|.||||||||.||||||||...|||.|..||.||
BL04015___ybb 1240 TTGCATAAACACGAGATTTATCTGGCGCATAACCGTTCTGTTCAAGATGT 1289
BSNT_00313___ 1287 TTTCTTTGG-------GGATTTAGGACTCAGCT------CGGCAACAA-C 1322
.||.||.|| ||.||| ||.||.||| |.|.||.|| |
BL04015___ybb 1290 ATTTTTCGGCGACCTTGGCTTT--GAATCGGCTGTGTCGCTGGAAGAACC 1337
BSNT_00313___ 1323 GGCTGACACACCTTCAGAACAAGCGATTTCGTTAGAAAATATCGCAAATT 1372
|.||||| |..||..|.|||.|.||||..||||||...|
BL04015___ybb 1338 GACTGAC------------CGGGCCGTGTCGATCGAAACAATCGCAGCCT 1375
BSNT_00313___ 1373 ACCAAGCTGACTGT-ATGATGCTTTTTCTTTTTAAAGAGCCGGAGACTAT 1421
|.| |||.|..|.| ||.|||.||||..|||||||||||||||||||..|
BL04015___ybb 1376 ATC-AGCCGGATATCATTATGATTTTCATTTTTAAAGAGCCGGAGACGCT 1424
BSNT_00313___ 1422 AGCTTACTACCAGCAATTACAGCAGACAGAAGCATGGCA-------AAAC 1464
.||.|.||||..|.|..|.||||||.|.|..||.||||| |||
BL04015___ybb 1425 GGCATTCTACAGGGAGCTTCAGCAGTCGGCTGCTTGGCAGGATTTGAAA- 1473
BSNT_00313___ 1465 CTAAGCGCGGTACGGAATAAGCGTGTTTATC-------TTCT-ATCCCTT 1506
|||||.|||.||.|.||.||.|||| |||| || ||||
BL04015___ybb 1474 ------GCGGTGCGGCATCACCGGGTGTATCAGGTGAATTCTGAT-CCTT 1516
BSNT_00313___ 1507 GACCCGTGGAATGAATACTCAGCTTGCGGGCACGAACGCATCGTTCAGCA 1556
| |.|| |||||.||.||.|||.|.||.|||||.|||.|.|..||
BL04015___ybb 1517 G----GCGG---GAATATTCCGCATGCAGCCATGAACGAATCATCCGCCA 1559
BSNT_00313___ 1557 AACTGTTTCTTTATTATCCGGAGATTGTCCATGA--- 1590
..|.|||....|..|.||||||.|...|||||..
BL04015___ybb 1560 GGCGGTTCGGCTGCTGTCCGGAAAAAATCCATTTTAA 1596
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