Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05604 and BL04008

See Amino acid alignment / Visit BSNT_05604 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:43
# Commandline: needle
#    -asequence dna-align/BSNT_05604___fdhD.1.5803.seq
#    -bsequence dna-align/BL04008___fdhD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05604___fdhD-BL04008___fdhD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05604___fdhD-BL04008___fdhD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05604___fdhD
# 2: BL04008___fdhD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 864
# Identity:     568/864 (65.7%)
# Similarity:   568/864 (65.7%)
# Gaps:         147/864 (17.0%)
# Score: 1949.0
# 
#
#=======================================

BSNT_05604___      1 TTGAACGATAAAGTAACTGCGGTCAGGGATGTATGG----------CGCT     40
                                                     ||||          |.| 
BL04008___fdh      1 --------------------------------ATGGGGAAAAACATCAC-     17

BSNT_05604___     41 ATGAACAAGGGGAAATA------------------------------AGC     60
                        ||||||..||||.|                              |||
BL04008___fdh     18 ---AACAAGCCGAAAAATTTTCCGTTATGATAATGGAGAGCTGGTGCAGC     64

BSNT_05604___     61 AAAGTAGAAGACCGGATGGTGACGGAATTCCCTTTGACAGTGATACTGAA    110
                     |    ||||||.|.|||||.||||||||||||..||||.||.||..||||
BL04008___fdh     65 A----AGAAGATCAGATGGCGACGGAATTCCCCCTGACTGTCATGGTGAA    110

BSNT_05604___    111 TGGC-AGTGAATTTGTGACGCTCGTTTGTACGCCTG--AGCATATCGAAG    157
                     .||| || ||||||||.|||||.|||||..||||.|  |||  .|.||||
BL04008___fdh    111 CGGCGAG-GAATTTGTCACGCTTGTTTGCTCGCCGGACAGC--CTGGAAG    157

BSNT_05604___    158 AGCTTGTCATCGGATTTCTCGCATCAGAGGGTGTTATACGATTTCAAAAA    207
                     |.||.||.|||||||||||||||||.||.||.||.||.||||||.||||.
BL04008___fdh    158 AACTGGTGATCGGATTTCTCGCATCTGAAGGGGTGATCCGATTTAAAAAT    207

BSNT_05604___    208 GAAATTAAAAGGTTTACAATAGATGAAAGTCTCGGTTTTGTATATGTCGA    257
                     ||.||||||||||||||||||||||||||.|||||.||.|.|||||||||
BL04008___fdh    208 GAGATTAAAAGGTTTACAATAGATGAAAGCCTCGGGTTCGCATATGTCGA    257

BSNT_05604___    258 CCTCGTTCACCCTGAGACA------TTGGATCAAAAGGATTATACGAAAC    301
                     |||.| |||.|     |||      .||.|.|..||||||||.||.||.|
BL04008___fdh    258 CCTTG-TCAGC-----ACAAAAAAGCTGCAGCTGAAGGATTACACAAAGC    301

BSNT_05604___    302 GGGTGATCGGCTCATGCTGCGGAAAGGGCCGTCATTTTTATTTTCAGCAG    351
                     |||||||||||||.|||||||||||.||..|.|||||||||||.||||||
BL04008___fdh    302 GGGTGATCGGCTCCTGCTGCGGAAAAGGGAGGCATTTTTATTTCCAGCAG    351

BSNT_05604___    352 GATGTCAAAACAGCCAA----------GACGGCTGTCAGCCAAATCAAGA    391
                     ||.||||||||.||.||          |||||| ||.|.|         |
BL04008___fdh    352 GACGTCAAAACCGCAAAAACAGCGATTGACGGC-GTGACC---------A    391

BSNT_05604___    392 TATCGCCTGAGGCATGTCTGGCGCTTATGAAAGACATGCAGCAAGGGAGC    441
                     |..||||.|||...|||.||..|||.|||...|||||||||.||.|.|||
BL04008___fdh    392 TTACGCCAGAGAACTGTTTGAAGCTGATGCGCGACATGCAGAAAAGCAGC    441

BSNT_05604___    442 GGGACGTTTCAGGATACGGGAGGCGTCCATAATGCGGCGCTT--TGCGAC    489
                     ..|...|||||..|||||||.|||||.||||||||  |||||  |||..|
BL04008___fdh    442 AAGCTTTTTCACCATACGGGGGGCGTTCATAATGC--CGCTTTGTGCAGC    489

BSNT_05604___    490 ACAGAGAAGCTTCTGTTGATGCGCA-------CCGATATCGGTCGGCACA    532
                     |||||.||||      |||| .|||       |.||||||||..||||.|
BL04008___fdh    490 ACAGACAAGC------TGAT-TGCAGTCAGATCTGATATCGGAAGGCATA    532

BSNT_05604___    533 ACGCACTTGATAAACTATACGGACACTG---CCTTCTAAACGGGATGTCC    579
                     |.||.|||||||||.|.||||||.|.||   .||||  |.|.||  .|||
BL04008___fdh    533 ATGCGCTTGATAAATTGTACGGATATTGTTTGCTTC--ATCAGG--TTCC    578

BSNT_05604___    580 -GTACGCGACAAACTGATTGTGTTCAGCGGCAGAATCTCATCAGAGGTCC    628
                      ||.|||||.||.|||||.||.||||||||||||||.||.||.||.||.|
BL04008___fdh    579 TGTGCGCGATAAGCTGATCGTATTCAGCGGCAGAATTTCTTCGGAAGTGC    628

BSNT_05604___    629 TGTTAAAAGCGGCCAAAATCGGCGTGTCGATTGTCATTTCCAAATCGGCC    678
                     ||.|.|||||.||.||||||||.||.||....|||||||||||.|||||.
BL04008___fdh    629 TGCTTAAAGCCGCGAAAATCGGGGTTTCCGCGGTCATTTCCAAGTCGGCG    678

BSNT_05604___    679 CCGACGGAGCTTGCGATTCAAATGGCTGAAGAATTGAATATCACAGCGAT    728
                     |||||.|||||.||.|||||.|||||.||.||..|||||||||...||||
BL04008___fdh    679 CCGACCGAGCTGGCCATTCAGATGGCAGAGGAGCTGAATATCATGACGAT    728

BSNT_05604___    729 TGGATTTGTCAGAAACGGATCATTTAATGTATATACACACCCTGAGAGAA    778
                     |||.||||..||||||.|.|||||.||||||||.||.||.|..|||.|||
BL04008___fdh    729 TGGTTTTGCGAGAAACCGGTCATTCAATGTATACACGCATCACGAGCGAA    778

BSNT_05604___    779 -TCAG--GGGATAG    789
                      ||||  ...|||.
BL04008___fdh    779 TTCAGTTTTCATAA    792


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05604 and BL04008

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
