Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05620 and BL04001
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:43
# Commandline: needle
# -asequence dna-align/BSNT_05620___atpC.1.5803.seq
# -bsequence dna-align/BL04001___atpC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05620___atpC-BL04001___atpC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05620___atpC-BL04001___atpC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05620___atpC
# 2: BL04001___atpC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 409
# Identity: 312/409 (76.3%)
# Similarity: 312/409 (76.3%)
# Gaps: 23/409 ( 5.6%)
# Score: 1195.5
#
#
#=======================================
BSNT_05620___ 1 ATGAAGACCGTTAAAGTCAATATCGTTACTCCCGACGGCCCAGTATACGA 50
|||||||||.|.||||||||||||||||||||||||||||||||||||||
BL04001___atp 1 ATGAAGACCTTAAAAGTCAATATCGTTACTCCCGACGGCCCAGTATACGA 50
BSNT_05620___ 51 TGCGGATATCGAAATGGTGAGTGTGAGAGCCGAAAGCGGCGATCTCGGTA 100
|||||||||.||||||||.||.||.|||||.||.|||||.||.||.||||
BL04001___atp 51 TGCGGATATAGAAATGGTAAGCGTTAGAGCAGAGAGCGGTGAGCTTGGTA 100
BSNT_05620___ 101 TTTTGCCAGGCCATATTCCAACCGTGGCTCCTCTTAAAATCGGCGCTGTC 150
||||.||.|||||||||||.||.||.|||||.||.|||||.|..||.|||
BL04001___atp 101 TTTTACCCGGCCATATTCCGACGGTTGCTCCGCTAAAAATTGCTGCAGTC 150
BSNT_05620___ 151 CGTCTGAAAAAAGACGGGCAGACTGAAATGGTTGCCGTCAGCGGCGGATT 200
|||||||||||||||||.||.|||||..||||||||||||||||.||..|
BL04001___atp 151 CGTCTGAAAAAAGACGGTCAAACTGAGCTGGTTGCCGTCAGCGGGGGGAT 200
BSNT_05620___ 201 TGTCGAAGTCCGTCCTGATCAGGTCACCATCCTTGCCCAGGCTGCCGAGA 250
.||.||||||||.|||||.||.||||||||.||.||||||.|.||.||.|
BL04001___atp 201 AGTGGAAGTCCGCCCTGACCATGTCACCATTCTGGCCCAGACGGCGGAAA 250
BSNT_05620___ 251 CAGCGGAAGGCATCGATAAAGAGCGCGC--TGAAGCTGCACGCCAGCGGG 298
||.|.|||...||.||.|||||.||||| || ||.|||...|.|||.|
BL04001___atp 251 CATCTGAACAAATTGACAAAGAACGCGCCTTG--GCCGCAAAACGGCGTG 298
BSNT_05620___ 299 CGCAGGAGCGTTTG--------AATTCTCAATCAGATGATACTGACATTC 340
|..||||.|||||| ||.|| |||||| .|||||||.
BL04001___atp 299 CCGAGGAACGTTTGCAAAAGCAAACTC-----CAGATG---TTGACATTA 340
BSNT_05620___ 341 GTCGGGCTGAGCTTGCGTTACAGCGGGCTTTGAACAGATTGGATGTAGCA 390
.||||||.||||||||.|||.|.||.||..|.|||.|.||||||||.||
BL04001___atp 341 TTCGGGCAGAGCTTGCTTTAAAACGCGCGATTAACCGGTTGGATGTTGC- 389
BSNT_05620___ 391 GGGAAATAA 399
||.|||.
BL04001___atp 390 --GAGATAG 396
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