Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05627 and BL03996

See Amino acid alignment / Visit BSNT_05627 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:44
# Commandline: needle
#    -asequence dna-align/BSNT_05627___atpF.1.5803.seq
#    -bsequence dna-align/BL03996___atpF.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05627___atpF-BL03996___atpF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05627___atpF-BL03996___atpF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05627___atpF
# 2: BL03996___atpF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 530
# Identity:     408/530 (77.0%)
# Similarity:   408/530 (77.0%)
# Gaps:          28/530 ( 5.3%)
# Score: 1545.5
# 
#
#=======================================

BSNT_05627___      1 ATGTCTCAATTACCAC---TT---------GAACTAGGATTGTCGTTTAA     38
                     ||||||...|||||||   ||         |.|.||||      ||||||
BL03996___atp      1 ATGTCTTTTTTACCACAGGTTATGGGTGCAGGAGTAGG------GTTTAA     44

BSNT_05627___     39 CGGCGGAGATATCCTGTTCCAAC-TGTTAGCTATGTTAATCTTATTAGCG     87
                     ||.||||...||.||||||||.| |||| ||.|||.|.||.||.||||||
BL03996___atp     45 CGCCGGAACAATGCTGTTCCAGCTTGTT-GCCATGCTGATTTTGTTAGCG     93

BSNT_05627___     88 CTTCTGAAGAAATACGCTTTAGGGCCGCTATTAAACATAATGAAACAGCG    137
                     ||..|||||||||||||||||||||||||||||||.|||||||||.||||
BL03996___atp     94 CTCTTGAAGAAATACGCTTTAGGGCCGCTATTAAATATAATGAAAGAGCG    143

BSNT_05627___    138 TGAAGACCACATCGCTGGAGAAATTACGTCTGCTGAAGAAAAA-AATAAA    186
                     |||||||.||||..|.|||||.||..|.|||||.| ||||||| |||.||
BL03996___atp    144 TGAAGACTACATTACCGGAGAGATCTCCTCTGCCG-AGAAAAAGAATGAA    192

BSNT_05627___    187 GAAGCGCAGCAGCTTATTGAAGAGCAGC--GCGTTCTTTTAAAAGAAGCA    234
                     ||||||.||.||||.|||||.|||||||  |||  |||||.|||||||||
BL03996___atp    193 GAAGCGAAGAAGCTCATTGAGGAGCAGCAGGCG--CTTTTGAAAGAAGCA    240

BSNT_05627___    235 AGACAGGAATCCCAAACTCTTATCGAAAACGCAAAGAAACTGGGAGAGAA    284
                     .|..|.||||||||..||||.||.||||||||.||.||||||||.||..|
BL03996___atp    241 CGCGAAGAATCCCAGTCTCTGATTGAAAACGCGAAAAAACTGGGTGAACA    290

BSNT_05627___    285 GCAAAAAGAAGAGATTATTCAGGCTGCACGTGCA-GAATCTGAACGTCTG    333
                     ||||||.||.||.||.||..|||||||.|| .|| |||.|.|||||..||
BL03996___atp    291 GCAAAAGGATGAAATCATCAAGGCTGCGCG-CCAGGAAGCAGAACGCATG    339

BSNT_05627___    334 AAAGAAGCAGCAAGAACTGAAATCGTGAAGGAAAAAGAACAGGCGGTTTC    383
                     ||||||.||||.||||..||.|||||.||.||||.|||.|||||.||..|
BL03996___atp    340 AAAGAATCAGCCAGAAGCGAGATCGTCAAAGAAAGAGACCAGGCTGTCAC    389

BSNT_05627___    384 TGCTCTCCGTGAGCAAGTAGCGTCTCTTTCTGTCATGATTGCGTCGAAAG    433
                     .||.||.||.|||||.||.||.||..|.|||||.|||||.||.||.||||
BL03996___atp    390 CGCGCTGCGCGAGCAGGTTGCATCATTGTCTGTGATGATCGCTTCTAAAG    439

BSNT_05627___    434 TGATCGAAAAAGAACTGGATGAACAAGCGCAAGAGAAATTGATCCAGGAC    483
                     |.|||||||||||.|||||.||||||||.||.||.|||||||||||.|||
BL03996___atp    440 TAATCGAAAAAGAGCTGGACGAACAAGCCCAGGAAAAATTGATCCAAGAC    489

BSNT_05627___    484 TATCTTAAAGAGGTAGGAGAAAGCCGATGA    513
                     |||||||||||.||||||||||||||||||
BL03996___atp    490 TATCTTAAAGAAGTAGGAGAAAGCCGATGA    519


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