Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05635 and BL03992

See Amino acid alignment / Visit BSNT_05635 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:44
# Commandline: needle
#    -asequence dna-align/BSNT_05635___upp.1.5803.seq
#    -bsequence dna-align/BL03992___upp.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05635___upp-BL03992___upp.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05635___upp-BL03992___upp.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05635___upp
# 2: BL03992___upp
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 634
# Identity:     504/634 (79.5%)
# Similarity:   504/634 (79.5%)
# Gaps:           8/634 ( 1.3%)
# Score: 1999.5
# 
#
#=======================================

BSNT_05635___      1 ATGGGAAAGGTTTATGTATTTGATCATCCTTTAATTCAGCACAAGCTGAC     50
                     |||||||||||.|||||.||||||||.|||.|.||.|||||.|||||.||
BL03992___upp      1 ATGGGAAAGGTATATGTGTTTGATCACCCTCTTATACAGCATAAGCTTAC     50

BSNT_05635___     51 ATATATACGGAATGAAAATACAGGTACGAAGGATTTTAGAGAGTTAGTAG    100
                     |||.||.|||.|.|.|||.||.||.|||||.||.||.||||||.|.||.|
BL03992___upp     51 ATACATCCGGGACGTAAAGACCGGAACGAAAGAATTCAGAGAGCTTGTTG    100

BSNT_05635___    101 ATGAAGTGGCTACACTCATGGCATTTGAAATTACCCGCGATCTTCCTCTG    150
                     ||||.||.||.||.||.|||||||||||.|||||.||.||.||.||.|||
BL03992___upp    101 ATGAGGTTGCAACGCTGATGGCATTTGAGATTACGCGAGACCTGCCGCTG    150

BSNT_05635___    151 GAAGAAGTGGATATCAATACACCGGTTCA---GGCTGCGAAA-TCGAAAG    196
                     ||.||||||.||.|..|.||.||.||.||   |||    ||| ||.||.|
BL03992___upp    151 GAGGAAGTGAATGTAGAGACTCCTGTGCAAATGGC----AAAGTCAAACG    196

BSNT_05635___    197 TCATCTCAGGGAAAAAACTCGGAGTGGTTCCTATCCTCAGAGCAGGATTG    246
                     |||||.|.||.|||||||||||.||.|||||.||.||.||||||||..|.
BL03992___upp    197 TCATCGCCGGAAAAAAACTCGGGGTTGTTCCGATTCTGAGAGCAGGGCTT    246

BSNT_05635___    247 GGAATGGTTGACGGCATTTTAAAGCTGATTCCTGCGGCAAAAGTGGGACA    296
                     ||||||||.|||||.|||||.||||||||||||||.||||||||.|||||
BL03992___upp    247 GGAATGGTAGACGGAATTTTGAAGCTGATTCCTGCTGCAAAAGTCGGACA    296

BSNT_05635___    297 TGTCGGCCTTTACCGTGATCCAGAAACCTTAAAACCCGTGGAATACTATG    346
                     ||||||.||||||||||||||.|||||.||.||.||.||.||.||.||||
BL03992___upp    297 TGTCGGGCTTTACCGTGATCCTGAAACATTGAAGCCTGTTGAGTATTATG    346

BSNT_05635___    347 TCAAGCTTCCTTCTGATGTGGAAGAGCGTGAATTCATCGTGGTTGACCCG    396
                     ||||||||||.||.|||||.|||||.||.|||||||||||.||.||.|||
BL03992___upp    347 TCAAGCTTCCATCCGATGTTGAAGAACGCGAATTCATCGTCGTCGATCCG    396

BSNT_05635___    397 ATGCTCGCTACAGGCGGTTCCGCAGTTGAAGCCATTCACAGCCTTAAAAA    446
                     |||||.||.||.||.|||||.||.||.||.||..|..|||||.|.|||||
BL03992___upp    397 ATGCTGGCAACCGGAGGTTCGGCGGTAGAGGCGCTGAACAGCTTGAAAAA    446

BSNT_05635___    447 ACGCGGTGCGAAAAATATCCGTTTCATGTGTCTTGTAGCAGCGCCGGAGG    496
                     ||||||.||.|||||||||||.||.||||||||..|.||.||.|||||.|
BL03992___upp    447 ACGCGGCGCAAAAAATATCCGCTTTATGTGTCTGATCGCTGCCCCGGAAG    496

BSNT_05635___    497 GTGTGGAAGAATTGCAGAAGCATCATTCGGACGTTGATATTTACATTGCG    546
                     ||||.||.|||.||||||||||||||.|.||||||||.|||||||||||.
BL03992___upp    497 GTGTAGACGAAGTGCAGAAGCATCATCCTGACGTTGACATTTACATTGCC    546

BSNT_05635___    547 GCGCTAGATGAAAAATTAAATGAAAAAGGATATATTGTTCCAGGTCTCGG    596
                     ||.||.|||||||||.|||||||||||||||||||.|||||.||..|.||
BL03992___upp    547 GCTCTGGATGAAAAACTAAATGAAAAAGGATATATCGTTCCCGGATTGGG    596

BSNT_05635___    597 AGATGCTGGTGACCGCATGTTTGGAACAAAATAA    630
                     .||.||.||.|||||||||||.|||||.||||||
BL03992___upp    597 CGACGCCGGAGACCGCATGTTCGGAACGAAATAA    630


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