Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05635 and BL03992
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:44
# Commandline: needle
# -asequence dna-align/BSNT_05635___upp.1.5803.seq
# -bsequence dna-align/BL03992___upp.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05635___upp-BL03992___upp.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05635___upp-BL03992___upp.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05635___upp
# 2: BL03992___upp
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 634
# Identity: 504/634 (79.5%)
# Similarity: 504/634 (79.5%)
# Gaps: 8/634 ( 1.3%)
# Score: 1999.5
#
#
#=======================================
BSNT_05635___ 1 ATGGGAAAGGTTTATGTATTTGATCATCCTTTAATTCAGCACAAGCTGAC 50
|||||||||||.|||||.||||||||.|||.|.||.|||||.|||||.||
BL03992___upp 1 ATGGGAAAGGTATATGTGTTTGATCACCCTCTTATACAGCATAAGCTTAC 50
BSNT_05635___ 51 ATATATACGGAATGAAAATACAGGTACGAAGGATTTTAGAGAGTTAGTAG 100
|||.||.|||.|.|.|||.||.||.|||||.||.||.||||||.|.||.|
BL03992___upp 51 ATACATCCGGGACGTAAAGACCGGAACGAAAGAATTCAGAGAGCTTGTTG 100
BSNT_05635___ 101 ATGAAGTGGCTACACTCATGGCATTTGAAATTACCCGCGATCTTCCTCTG 150
||||.||.||.||.||.|||||||||||.|||||.||.||.||.||.|||
BL03992___upp 101 ATGAGGTTGCAACGCTGATGGCATTTGAGATTACGCGAGACCTGCCGCTG 150
BSNT_05635___ 151 GAAGAAGTGGATATCAATACACCGGTTCA---GGCTGCGAAA-TCGAAAG 196
||.||||||.||.|..|.||.||.||.|| ||| ||| ||.||.|
BL03992___upp 151 GAGGAAGTGAATGTAGAGACTCCTGTGCAAATGGC----AAAGTCAAACG 196
BSNT_05635___ 197 TCATCTCAGGGAAAAAACTCGGAGTGGTTCCTATCCTCAGAGCAGGATTG 246
|||||.|.||.|||||||||||.||.|||||.||.||.||||||||..|.
BL03992___upp 197 TCATCGCCGGAAAAAAACTCGGGGTTGTTCCGATTCTGAGAGCAGGGCTT 246
BSNT_05635___ 247 GGAATGGTTGACGGCATTTTAAAGCTGATTCCTGCGGCAAAAGTGGGACA 296
||||||||.|||||.|||||.||||||||||||||.||||||||.|||||
BL03992___upp 247 GGAATGGTAGACGGAATTTTGAAGCTGATTCCTGCTGCAAAAGTCGGACA 296
BSNT_05635___ 297 TGTCGGCCTTTACCGTGATCCAGAAACCTTAAAACCCGTGGAATACTATG 346
||||||.||||||||||||||.|||||.||.||.||.||.||.||.||||
BL03992___upp 297 TGTCGGGCTTTACCGTGATCCTGAAACATTGAAGCCTGTTGAGTATTATG 346
BSNT_05635___ 347 TCAAGCTTCCTTCTGATGTGGAAGAGCGTGAATTCATCGTGGTTGACCCG 396
||||||||||.||.|||||.|||||.||.|||||||||||.||.||.|||
BL03992___upp 347 TCAAGCTTCCATCCGATGTTGAAGAACGCGAATTCATCGTCGTCGATCCG 396
BSNT_05635___ 397 ATGCTCGCTACAGGCGGTTCCGCAGTTGAAGCCATTCACAGCCTTAAAAA 446
|||||.||.||.||.|||||.||.||.||.||..|..|||||.|.|||||
BL03992___upp 397 ATGCTGGCAACCGGAGGTTCGGCGGTAGAGGCGCTGAACAGCTTGAAAAA 446
BSNT_05635___ 447 ACGCGGTGCGAAAAATATCCGTTTCATGTGTCTTGTAGCAGCGCCGGAGG 496
||||||.||.|||||||||||.||.||||||||..|.||.||.|||||.|
BL03992___upp 447 ACGCGGCGCAAAAAATATCCGCTTTATGTGTCTGATCGCTGCCCCGGAAG 496
BSNT_05635___ 497 GTGTGGAAGAATTGCAGAAGCATCATTCGGACGTTGATATTTACATTGCG 546
||||.||.|||.||||||||||||||.|.||||||||.|||||||||||.
BL03992___upp 497 GTGTAGACGAAGTGCAGAAGCATCATCCTGACGTTGACATTTACATTGCC 546
BSNT_05635___ 547 GCGCTAGATGAAAAATTAAATGAAAAAGGATATATTGTTCCAGGTCTCGG 596
||.||.|||||||||.|||||||||||||||||||.|||||.||..|.||
BL03992___upp 547 GCTCTGGATGAAAAACTAAATGAAAAAGGATATATCGTTCCCGGATTGGG 596
BSNT_05635___ 597 AGATGCTGGTGACCGCATGTTTGGAACAAAATAA 630
.||.||.||.|||||||||||.|||||.||||||
BL03992___upp 597 CGACGCCGGAGACCGCATGTTCGGAACGAAATAA 630
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