Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05644 and BL03986
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:45
# Commandline: needle
# -asequence dna-align/BSNT_05644___ywlC.1.5803.seq
# -bsequence dna-align/BL03986___ywlC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05644___ywlC-BL03986___ywlC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05644___ywlC-BL03986___ywlC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05644___ywlC
# 2: BL03986___ywlC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1108
# Identity: 738/1108 (66.6%)
# Similarity: 738/1108 (66.6%)
# Gaps: 131/1108 (11.8%)
# Score: 2350.0
#
#
#=======================================
BSNT_05644___ 1 ATGAAAACGAAAAG-ATGGTTTGTGGATGTAACTGACGAGTTATCCACAA 49
|||||||| ||||| ||||..|||||||||||....|||.||.|||||||
BL03986___ywl 1 ATGAAAAC-AAAAGTATGGACTGTGGATGTAAAACGCGATTTGTCCACAA 49
BSNT_05644___ 50 A-TGATCCACAAATTGCACAAGC----AGCCGCTTTGCTCCGAG-AAAAT 93
| || |||||||||||||||.|| ||.| ||||.| || |||||
BL03986___ywl 50 ACTG-TCCACAAATTGCACAGGCGGCAAGAC----TGCTTC-AGCAAAAT 93
BSNT_05644___ 94 GAGGTCGTTGCCTTTCCGACAGAAACAGTATATGGCCTAGGCGCAAACGC 143
||....|||||.|||||||||||.||.||.||.||.||.||.||||||||
BL03986___ywl 94 GAAACGGTTGCTTTTCCGACAGAGACTGTTTACGGTCTTGGTGCAAACGC 143
BSNT_05644___ 144 AAAAAATACGGATGCCGTCAAAAAAATATATGAGGCGAAAGGACGGCCGA 193
.|||.|.|..||.||.||....||||||||.||.||||||||.|||||||
BL03986___ywl 144 CAAACACAGCGAAGCAGTAGCTAAAATATACGAAGCGAAAGGGCGGCCGA 193
BSNT_05644___ 194 GCGATAATCCCCTGATTGTCCACATTGCGGATATCAGCCAGCTTG-AGGA 242
||||.|||||.||.|||||||||||.||.||.||....||||||| ||.|
BL03986___ywl 194 GCGACAATCCGCTCATTGTCCACATCGCTGAAATTGAACAGCTTGCAGAA 243
BSNT_05644___ 243 TTTAACGG----------GCC-CAGCGCCGGAAAAGGCGAAAACATTGAT 281
||| .||| ||| ||| |||| |||.|| ||||
BL03986___ywl 244 TTT-GCGGAAGTTGATTCGCCTCAG-GCCG--AAATGC--------TGAT 281
BSNT_05644___ 282 GAAACGGTTTTGGCCGGGAGCACTTACGCTCATACTGCCTTGCAAACCTG 331
|||.||.||||||||.||..|.||.||.||..|.|||||.|||||.||.|
BL03986___ywl 282 GAAGCGTTTTTGGCCCGGGCCGCTGACCCTTGTGCTGCCGTGCAAGCCCG 331
BSNT_05644___ 332 GTGCGCTTTCACCTCGTGTAACGGCAGGTCTTGATACGGTTGCCATTAGA 381
|.|.|.|.||..|..|.||.|||||.||.||.||.|||||.||..|||||
BL03986___ywl 332 GGGTGTTATCCACAAGGGTGACGGCGGGGCTCGACACGGTCGCGGTTAGA 381
BSNT_05644___ 382 ATGCCGGATCATCCACTTGCCCTTGCATTGATTCGCGAATCGGGACTGCC 431
|||||.||||||||..|.||.||||...|||||.|..|..|.||..|.||
BL03986___ywl 382 ATGCCTGATCATCCTGTGGCGCTTGAGCTGATTAGACAGGCCGGCGTTCC 431
BSNT_05644___ 432 GATTGCAGCACCGAGCGCCAATCTATCAGGCAAGCCAAGTCCCACAAAAG 481
|.|.||.||.||||||||.|||||.||.||.||.||.|||||.||.||||
BL03986___ywl 432 GGTGGCTGCCCCGAGCGCAAATCTGTCCGGAAAACCGAGTCCGACGAAAG 481
BSNT_05644___ 482 CAGAGCATGT-GGCACACGACTTGGATGGCCGCATAGCCGGTATTATGGA 530
|.|||||||| |.|| ||||.|||.||||.||.||.||.|||.|..|.||
BL03986___ywl 482 CCGAGCATGTCGTCA-ACGATTTGAATGGACGGATTGCGGGTGTCGTTGA 530
BSNT_05644___ 531 TGGAGGCCCTACCGGAATCGGGGTTGAATCAACCGTGCTTTCATGTGCGG 580
.||.||||||||.|||.|.||||||||||||||.||..|||||||..|.|
BL03986___ywl 531 CGGCGGCCCTACAGGAGTAGGGGTTGAATCAACAGTTGTTTCATGCACCG 580
BSNT_05644___ 581 ACGACATCCCTGTTCTCCTGCGTCCTGGCGGTATTACGAAGGAACA---- 626
..||.||.||.||..|..||.|.||.|||||..|.||.||.||.||
BL03986___ywl 581 GTGAAATTCCGGTCATTTTGAGGCCGGGCGGCGTCACAAAAGAGCAGCTC 630
BSNT_05644___ 627 -AATTGAAGCGGTGATCGGGCCGATTCATG-TGGATAAAGGGCTCAGCGA 674
|| ||||||| |.||||...||.|| |.||..|.||.||||.|||
BL03986___ywl 631 GAA--GAAGCGG----CCGGCCCCGTCTTGATTGACCAGGGCCTCACCGA 674
BSNT_05644___ 675 TCAAAACGAGAAGCCGATTTCTCCAGGGATGAAATATACACATTATGCGC 724
..||||..||..|||.||.|||||.||||||||||||||.||||||||.|
BL03986___ywl 675 CGAAAAAAAGGCGCCTATGTCTCCCGGGATGAAATATACGCATTATGCAC 724
BSNT_05644___ 725 CGACAGCGCCTCTTGCCATTTGCGAA---GGCAGCCCAGAGCGCATTCAG 771
||..|||.||||||||.| |||.||| ||.|| ..|||...|||||.
BL03986___ywl 725 CGGAAGCACCTCTTGCTA-TTGTGAACGGGGGAG--TTGAGGATATTCAA 771
BSNT_05644___ 772 CACCTCATTCAAGAATATCAACAGGGCGGAAGACGG-------GTCGGTG 814
|..||.||..|..||||||| |.||||||| |||||||
BL03986___ywl 772 CGGCTGATCGACCAATATCA-------GAAAGACGGGATGAAAGTCGGTG 814
BSNT_05644___ 815 TCCTGACGACAGAAGAAAACGCGGGC----GTTTAT-------------T 847
||||.||||||||.||| ||||| ||.||| |
BL03986___ywl 815 TCCTTACGACAGAGGAA----CGGGCCGATGTCTATCAGGCCGATGCCGT 860
BSNT_05644___ 848 CCGCTGATTATGTGAAGAGCTGCGGAAGACGGGCTCAGCTTGAGACTGTT 897
|||| |.||||||.|||.|.|..|..|||||.||.|||
BL03986___ywl 861 CCGC-------------ATCTGCGGCAGAAGAGACCGACTTGAAACGGTT 897
BSNT_05644___ 898 GCGGCAGGGCTGTATGATGCTTTGCGCAGCTTTGATGAGAATAAGG--TG 945
||.||.||..|||||||.|.|.|.|||||||||||| |||.||.| |.
BL03986___ywl 898 GCCGCCGGTTTGTATGACGTTCTCCGCAGCTTTGAT--GAAGAACGTCTC 945
BSNT_05644___ 946 GATTTGATTATCTCGGAATCCTTTCCGGACACAGGTGTCGGTCTCGCCAT 995
|||||.|||.|..||||.||.|||||.||...|||.||.||.|..||.||
BL03986___ywl 946 GATTTTATTTTTGCGGAGTCTTTTCCTGAGGAAGGAGTGGGCCGGGCGAT 995
BSNT_05644___ 996 TATGAACAGGCTGATGAAAGCCGCCGG-----------AGGAAGAGT-GA 1033
|||||||.|||||.|||||||.||||| ..||||.|| |
BL03986___ywl 996 TATGAACCGGCTGTTGAAAGCGGCCGGCCACCGCGTAATCGAAGCGTAG- 1044
BSNT_05644___ 1034 TTCGCTGA 1041
BL03986___ywl 1044 -------- 1044
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