Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01789 and BL03983
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:16
# Commandline: needle
# -asequence dna-align/BSNT_01789___glcP.1.5803.seq
# -bsequence dna-align/BL03983___glcP.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01789___glcP-BL03983___glcP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01789___glcP-BL03983___glcP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01789___glcP
# 2: BL03983___glcP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1420
# Identity: 725/1420 (51.1%)
# Similarity: 725/1420 (51.1%)
# Gaps: 434/1420 (30.6%)
# Score: 1572.5
#
#
#=======================================
BSNT_01789___ 1 ATGTTAAGAGGGACATATT--TATTTGGATATGCTTTCTTTTTTACAGTA 48
|||..|| |.||||| ||||.||.|.|.|.||.|.||||..||||
BL03983___glc 1 ATGAAAA-----AAATATTTCTATTCGGCTGTTCGTTTTATTTTCTAGTA 45
BSNT_01789___ 49 GGCATTATCCATATATCAAC-AGGGAGTTTGACACCATTTCTATTAGAGT 97
||..|||||||||| ||..| .|||||..||.|||| .||.| |
BL03983___glc 46 GGGGTTATCCATAT-TCTGCTGGGGAGCCTGTCACC-------GTACA-T 86
BSNT_01789___ 98 CTTTTAACAAGA-CAACAG-------ATGATATTTCGGTCATAATCTTCT 139
|.||.||.||.| ||||.| |||||.|.||..||.|.|||||.|
BL03983___glc 87 CATTCAAGAATATCAACGGGATCTTCATGATCTATCCTTCCTGATCTTTT 136
BSNT_01789___ 140 TTCAGTTTACCGGATTTCTAAGCGGAGTATTAATCGCACCGTTAATGATT 189
|.||.||.|||||.|||||||.|||.||..|..|.||.||| |||.||
BL03983___glc 137 TCCAATTCACCGGTTTTCTAAACGGCGTCCTGCTTGCGCCG---ATGTTT 183
BSNT_01789___ 190 AAGAAATACAGTCATTTTAGGACACTTACTT----TA--GCT---TTGAC 230
|||| |||.| ||.| || ||| |||||
BL03983___glc 184 ----------GTCA------GACGC--ACCTCTCATACGGCTGTATTGAC 215
BSNT_01789___ 231 AATAATGCTTGCAGCGTTAAGCATCTTTTTTCTAACTAAGGATT--GGTA 278
|.||| ||.|| |.|| ||.||||...||.|..|| |||.
BL03983___glc 216 ------GTTTG--GCCTT---CTTC-TTATTCTCGTTACGCTTTTAGGTG 253
BSNT_01789___ 279 TT----------ATA---------TTATTGTAAT----GGCTTTT--CTC 303
|| ||| ||.||||.|| ||.|||| |||
BL03983___glc 254 TTTTCCTTTTTGATATGTTCATCTTTTTTGTCATCATGGGATTTTTGCTC 303
BSNT_01789___ 304 TTAGGATATGGGGCAGGCACATTAGAAACGACAGTTGGTTCATTTGTTAT 353
||.|.|||.||.||.||.|||||||||||..|.||..|.|.|||.||
BL03983___glc 304 ---GGCTTTGGCGCGGGTACTTTAGAAACGACGATGGGGGCGTATGTGAT 350
BSNT_01789___ 354 TGC-TAATTTCGAAAGTAATGCAGAAA-AAATGAGTAAGCTGGAAGTTCT 401
||| .|| ||.|..||||| |||| ..||||.||...|.||.|||.|
BL03983___glc 351 TGCGCAA----GATAAAAATGC-GAAAGGGATGAATATTTTAGAGGTTTT 395
BSNT_01789___ 402 CTTTGGATTAGGCGC-TTTATCTTTCCCATTATTAATTAATTCCTT---C 447
.||.||||||||||| .|..|.|||||..||.|||.|||..||||| .
BL03983___glc 396 TTTCGGATTAGGCGCGCTGCTGTTTCCTTTTCTTATTTATATCCTTACGG 445
BSNT_01789___ 448 ATAGATAT-CAATAACTGGTTTTTACCGTATTACTGTA-----TATTCAC 491
|..||||| | ||||..|||.||.| |||| ||||.|.
BL03983___glc 446 AACGATATGC-----CTGGCATTTCCCCT-----TGTATGCTTTATTTAT 485
BSNT_01789___ 492 CTTTTTATTCGTCCTATTC----GTA---GGGTGGTTAATTTTCTTGTCC 534
|||..|.||.||.| || ||| ||||||||.||||
BL03983___glc 486 CTTCGTTTTTGTGC---TCGCGTGTATGTGGGTGGTTTATTT-------- 524
BSNT_01789___ 535 AAGAACCGAAAGTACGCTAAGAATGCCAACCAACAAGTGAC--CTTTC-- 580
||..|||| .|||| |..|..|| |||.|
BL03983___glc 525 ---------------GCGCAGAA---AAACC--CCCGGCACTGCTTCCGG 554
BSNT_01789___ 581 -CAGATGG------AGGAGCA--------TTTCA---ATACTTTATA--G 610
||||||| ||||..| |.||| |||.||.|.| |
BL03983___glc 555 TCAGATGGCTTATCAGGAAAAACCGACTGTATCAGCCATATTTGAAACCG 604
BSNT_01789___ 611 GA--GATAGAAAAAAATCAAAGCAATTAGGCTTTTTTGTATTTTTTGCTT 658
|| ||.||||||||| ||.|| .|.|.|||.|..|.||.||||
BL03983___glc 605 GAAGGAAAGAAAAAAA------CATTT--TCCTCTTTCTCATATTCGCTT 646
BSNT_01789___ 659 TCCTATATGCTGGAATTGAAACAAATTTTGCCAACTTTTTACCTTCAATC 708
|..|.|||||.||.||.||.||.|||||.||.||||||||.||..|..|.
BL03983___glc 647 TTGTGTATGCGGGTATCGAGACCAATTTCGCAAACTTTTTGCCGGCGCTG 696
BSNT_01789___ 709 ATGAT--AAACCAAGACAATGAACAAATTAGTCTTATAAGTGTCTCCTTT 756
|||.| ||| |||....||||.||||.||..|.||.||.|||.|.|||
BL03983___glc 697 ATGCTGGAAA--AAGGGGCTGAAGAAATCAGCGTGATCAGCGTCACGTTT 744
BSNT_01789___ 757 TTCTGGGTAGGGATCATCAT-AGGAAGAATATTGATTGGTTTAGTAAGTA 805
||.|||...|||||..| || .|||.|..|||||| .||||
BL03983___glc 745 TTTTGGACGGGGATGGT-ATGCGGACGTTTATTGA---------CAAGT- 783
BSNT_01789___ 806 GAAGGCTCGATTTTT-----CCAAATACCT-------CCTTTTT------ 837
|||||| .|..|||.|| |||||.|
BL03983___glc 784 ---------ATTTTTGGCGGACGCATAACTTCCGTTGCCTTTCTGATCTT 824
BSNT_01789___ 838 ---AGCTGTAG--TTGTTTAATTGTTTTG---TTGAT-------TGCCTT 872
.||.|.|| ||| |.||||||| ||||| ||..||
BL03983___glc 825 CAGCGCCGGAGCCTTG----ACTGTTTTGCTTTTGATTCTCGCGTGGTTT 870
BSNT_01789___ 873 C----TCTTATATAAGTAACCCAATACTTCAATTGGGTGGTAC----ATT 914
| || ||.| |||.|| |.||.|.| |||
BL03983___glc 871 CCGGTTC----ATCA--AACACA------------GCTGCTCCTCGTATT 902
BSNT_01789___ 915 TTTGATTGGCCTAAGT--ATAGCGGGTATATTTCCCATTGCTTTAACACT 962
|||.||.||.|| || ..|||.||.||.|||||....||..|.||.||
BL03983___glc 903 TTTCATCGGGCT--GTCGGCAGCCGGCATTTTTCCGTGCGCCGTCACTCT 950
BSNT_01789___ 963 AGCATC----------AATCATTATTCAGAAGTACGTTGACGAAGTTACA 1002
.||.|| ||.|.||.|.|| ||.|||.|.||.
BL03983___glc 951 TGCCTCGTTGGCTGGAAAGCCTTTTACA----------GAGGAAATCACG 990
BSNT_01789___ 1003 AGTTTATTTATTGCCTCGGCAAGTTTCGGAGGAGCGATCATCTCTTTCTT 1052
|||.|.||.|||.|.||.||||||.|.|||||||||.|..|.||.|||||
BL03983___glc 991 AGTCTCTTCATTTCGTCCGCAAGTCTGGGAGGAGCGCTTCTTTCATTCTT 1040
BSNT_01789___ 1053 AATTGGAT-GGAGTTTAAATCAGGATACGA------------TCTTATTA 1089
.||.||.| ||.|.|| |||.|.| ||||
BL03983___glc 1041 GATCGGCTGGGCGATT-------GATGCAAGCGCAGCCGCTGTCTT---- 1079
BSNT_01789___ 1090 ACC-------------------AT----GGGAATATTTACAACT------ 1110
|| || ||| .||.|..||
BL03983___glc 1080 -CCCGTTTTTGCTGTTCGGCGGATTGGGGGG----CTTGCTGCTGGCGAT 1124
BSNT_01789___ 1111 -ATGGCGGTCATTCTAGTAGGTATTT-------CTGTAAAGATTAGGAGA 1152
|..|||||.||| |.||| |||.|||
BL03983___glc 1125 CAGCGCGGTGATT--------TTTTTATCCGGCCTGCAAA---------- 1156
BSNT_01789___ 1153 ACTAAAAC-AGAAGACCCTATTTCACTTGAAAACAAAGCATCAAAAACAC 1201
||||| ||.||| .|||.|||.|.|...||
BL03983___glc 1157 ---AAAACAAGCAGA------GTCATTTGGATATGTAG------------ 1185
BSNT_01789___ 1202 GTGTAAATGAAAGATACTAA 1221
BL03983___glc 1185 -------------------- 1185
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