Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01790 and BL03982
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:16
# Commandline: needle
# -asequence dna-align/BSNT_01790___yhjJ.1.5803.seq
# -bsequence dna-align/BL03982___ntdC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01790___yhjJ-BL03982___ntdC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01790___yhjJ-BL03982___ntdC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01790___yhjJ
# 2: BL03982___ntdC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1194
# Identity: 677/1194 (56.7%)
# Similarity: 677/1194 (56.7%)
# Gaps: 288/1194 (24.1%)
# Score: 1699.5
#
#
#=======================================
BSNT_01790___ 1 ATGAAGAAGATTGGCATCATAGGTGCAGGTGGTATTGCAAGAGCGCAAGC 50
|.|||.||.||.||.|||||.||.||.||.|||||||.|||.||.||
BL03982___ntd 1 ---ATGAAAATCGGAATTATAGGAGCCGGAGGAATTGCAAAAGCCCATGC 47
BSNT_01790___ 51 AACTGCTTTATCTACAATAAAAAATGCAGAGTTAGTAGGGGTATATGACA 100
.|..|||.|.||.|||.|.|||..|||.|||.|....|||.|.|.|||.|
BL03982___ntd 48 GAAAGCTCTTTCAACAGTCAAAGGTGCCGAGCTTTCCGGGTTTTTTGATA 97
BSNT_01790___ 101 T-AAATCAACAAAATGCGGAAAGCTTTGTGAAAACTTTCG-------GCG 142
| ||.|| |||| ..||.||| |||
BL03982___ntd 98 TCAACTC---------------GCTT------GCCTCTCGTAAATGTGCG 126
BSNT_01790___ 143 GGAAGTCATTTGAAAACGCAGATGAACTAATTGATGCCT----------- 181
||||||.||| ||.|||| |||||
BL03982___ntd 127 --------TTTGAATACG--GAGGAAC-------TGCCTTTACCAGTATG 159
BSNT_01790___ 182 CAGAAG--GTT-----------------TAATTGTAGCATCACCAAACTT 212
|||.|| ||| |.||.||..||||.||.|||||
BL03982___ntd 160 CAGGAGCTGTTGAATCAGTCGACGGCAGTCATCGTTTCATCGCCGAACTT 209
BSNT_01790___ 213 TTGCCATAAAGAACATGC-TTTGCAAGCATT------AGGAAAACATAAG 255
|||||||||||||||||| .||| ||||..| ||| .|||
BL03982___ntd 210 TTGCCATAAAGAACATGCGCTTG-AAGCGATGGCTGCAGG------GAAG 252
BSNT_01790___ 256 CATGTATTGTGTGAAAAGCCTATGGCTATTTCCCTTGAAGAAGCAAGCAT 305
.||||||||||||||||.||.||||||.|.||..|.||||||||
BL03982___ntd 253 TATGTATTGTGTGAAAAACCGATGGCTGTCTCAATGGAAGAAGC------ 296
BSNT_01790___ 306 AATGAAAGATACTGCTGAAAGGTTGAGCGT---AA--------------G 338
|.|.|| |.|||||.|..|.|||| || |
BL03982___ntd 297 ---GGAGGA----GATGAAAAGCAGGGCGTCTCAATCCGCTTATATTCCG 339
BSNT_01790___ 339 AGCCAGTATGGGATTTAATTATAGATATTTATCTTACGTAAATATCTTAA 388
|.| |||||.||.|||||..|..||.|..|.|.|||.||...|.| |
BL03982___ntd 340 ATC----ATGGGCTTCAATTACCGCCATCTCACATTCGTTAAGCGCCT-A 384
BSNT_01790___ 389 AAAGCTTAATTATCAAT-----AATGAACTAGGTAACATACTGTCCATAA 433
||||.| ||.|| || ||||||||.||..|.||..|||||||.|
BL03982___ntd 385 AAAGAT--ATGAT--ATCCGGCAATGAACTTGGAGATATTTTGTCCATCA 430
BSNT_01790___ 434 AAGTACACTTCAAGAAAAATAGTGCACTT-AGACGTAAGAAGTTTACTTG 482
|.||.||.||.||||||||.||.|| ||| |||.|.||.||.|.||||||
BL03982___ntd 431 ATGTCCATTTTAAGAAAAACAGCGC-CTTGAGAAGAAAAAAATATACTTG 479
BSNT_01790___ 483 GAGAGATGACGCTAACAGTAAGAAGACGAGTGGATCATTGGGGGATCTGG 532
|.|.|||.|..|.||.||.||.||.|||||.||..||||.||.|||.|||
BL03982___ntd 480 GCGCGATCATTCGAAAAGCAACAAAACGAGCGGGGCATTAGGAGATTTGG 529
BSNT_01790___ 533 GTATTCACCTTATTGACATGGTATGGTATTTGTTTGAGAG--TGATTTCA 580
|..|.||..|.||.||..|..||...||||||||.||.|| .| |||.|
BL03982___ntd 530 GCGTGCATTTAATCGATCTCATACTCTATTTGTTCGACAGCCCG-TTTAA 578
BSNT_01790___ 581 TCACAGAATCAGT---AAGGGCAAAAATGAACACAAATGTAAAAACAAAA 627
||.|.| |||| ||.|.| |||||||..||....||.|||..||||
BL03982___ntd 579 --ACTGGA-CAGTTTAAAAGTC-AAAATGATGACGGTCGTCAAAGAAAAA 624
BSNT_01790___ 628 GAGGATAAACAGGTACTCGTAGATGACTATGCAGAAATTTATGGCCAGC- 676
||..|.|||||||||...||.|||||..||.|||||.|.||.|||||||
BL03982___ntd 625 GAACAAAAACAGGTATATGTTGATGATCATTCAGAAGTATACGGCCAGCT 674
BSNT_01790___ 677 TGAAGAACAAGGTATTTGTAAATATCATCACATCAAAATGTTCTGTACCT 726
|||| ||..|.||.|||||.|||||.||.||.||||||||..|...|.|.
BL03982___ntd 675 TGAA-AATCATGTGTTTGTCAATATGATTACGTCAAAATGCACAAAATCG 723
BSNT_01790___ 727 GAAGACTGTGGTTTTAGCATTGAGGTAGTTGGACA-----CAAAAAAGAG 771
||.||.||.||.||.|||||.||||| || |||||..|.|
BL03982___ntd 724 GATGAGTGCGGCTTCAGCATCGAGGT-------CAACGGCCAAAACGGCG 766
BSNT_01790___ 772 --TTTAAATACCA--CA---CAGGTAATCCTCACGTTTACAAGCTCATAG 814
|||.|.||.|| || ||| ||...|||..||| .||| |
BL03982___ntd 767 TATTTTACTATCATTCACGGCAG--AAAAATCAGTTTT---TGCT----G 807
BSNT_01790___ 815 ATGGC----TTGAACG-------TGGTAGAC--TGCCCAGTAC-CG---- 846
|.||| ||| ||| ||.|| || |||| |.|| ||
BL03982___ntd 808 AGGGCCGGATTG-ACGGAGCAGATGATA-ACAATGCC--GGACACGTGGC 853
BSNT_01790___ 847 ---CAAAGCCTATTAAACGATCCGCCAAACGAGTTTTATGGATGGGCTGA 893
||.|.||| || |||.||.|||||.||||||||.||
BL03982___ntd 854 TGACAGACCCT-------GA------AAATGAATTTTACGGATGGGCCGA 890
BSNT_01790___ 894 TTCTTTTAGA----AGCGAGTTAATCAATTGGATTGCATCAACTCAGAAT 939
|||.||.||| ||| |.|||.|.||||| |||.
BL03982___ntd 891 TTCCTTCAGAGTTCAGC----TGATCCAATGGAT------------GAAC 924
BSNT_01790___ 940 G--ATTGGG----------TTGAGATCCCTT----CTTTTAGTGATGGTT 973
| |||.|| ||| .|||.||| |||||...|||||.|
BL03982___ntd 925 GGAATTCGGGATCGCAATTTTG-CATCTCTTGCCACTTTTGAAGATGGAT 973
BSNT_01790___ 974 TTAGATCTCAGGA---AGTATTA--GAAATG--TTCTTTGAGAAA-GACA 1015
.||.|| |||..|| .||||| ||.||..|.||| |.||
BL03982___ntd 974 -------ACAAGACGCAGTTCTACTTAAATGAATTTTTCAATAAAGGTCA 1016
BSNT_01790___ 1016 GCAACTCTCAACCAATGTCTGTTTC------AGCAGTCAACTAG 1053
|||.| ||||..|||| |||| ||||||
BL03982___ntd 1017 GCAGC----------TGTCCCTTTCAAAACAAGCA---AACTAG 1047
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