Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01793 and BL03980
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:16
# Commandline: needle
# -asequence dna-align/BSNT_01793___yhjL.1.5803.seq
# -bsequence dna-align/BL03980___ntdA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01793___yhjL-BL03980___ntdA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01793___yhjL-BL03980___ntdA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01793___yhjL
# 2: BL03980___ntdA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1466
# Identity: 848/1466 (57.8%)
# Similarity: 848/1466 (57.8%)
# Gaps: 292/1466 (19.9%)
# Score: 2103.0
#
#
#=======================================
BSNT_01793___ 1 ATGCAAAAACAGGTTAAGATTTCAGGTAAAAGCAAA-GAAAACATGTCAC 49
||| ||||| .||||| ||||||||| ||
BL03980___ntd 1 ATG--AAAAC--------------------CGCAAACGAAAACATG--AC 26
BSNT_01793___ 50 TATTA-----AAACA-------------CTTAA-------AAGGTGACGT 74
|...| ||||| ||.|| ||||
BL03980___ntd 27 TTGCACGAGCAAACAGCTATTTGTCCTTCTGAATGATTTGAAGG------ 70
BSNT_01793___ 75 ACAAGGAAAAGAACTTGTTATTGAAGACAGTATTGTAAACGA-GCGGTGG 123
|||||| |.||.|.|..||||..|.||| ||.|||| .|..|||
BL03980___ntd 71 --AAGGAA---AGCTCGCTGGTGAATGCCGTA---TAGACGACACACTGG 112
BSNT_01793___ 124 --AAACAAGTATTAAAAGAAAAGATAGATATTG-AACATGACCTTTTCAA 170
||.|||..|||||||| |||.|||| |.||.||.|..|||.|
BL03980___ntd 113 CCAATCAAAAATTAAAAG-------AGACATTGCAGCAGGATCAATTCGA 155
BSNT_01793___ 171 CTATCAAAAAAATCG---------TGAAATCAGTAA---AGTCCC----- 203
| |.||.|| |||| ||| || |.||||
BL03980___ntd 156 C-------ATAACCGCCAATTTGCTGAA--CAG-AATGGATTCCCCGCCC 195
BSNT_01793___ 204 -----------TTTTTTGCCTGTAGACAGATTAATAACCAATGATGAAGT 242
.|||.||||..|..|..||.|.||.||..|.||.|||||
BL03980___ntd 196 TCCAGAGTTGACTTTATGCCGCTTCATCGACTGATCACAGAAGAAGAAGT 245
BSNT_01793___ 243 GGAAGATATCTTAAATACATTAACTGAAGTTTTGCCAACTGGAAAATTTA 292
.||.||..|..|..||.|..|.|..||.||..||||.||.||..||||||
BL03980___ntd 246 AGATGACGTGGTTCATGCGGTGAAAGACGTGCTGCCGACCGGGCAATTTA 295
BSNT_01793___ 293 CGAG------------TGGCCCCTATTTAGAGCAATTCGAAAACGTTTTA 330
|.|| ||| |.|||||..||| .|||| ||
BL03980___ntd 296 CAAGCGGTTTTTATGTTGG--CGTATTTGAAGC----TGAAA------TA 333
BSNT_01793___ 331 TCTACATATTTACATAAAAGGTATGTAAT---TGCAACCAGCAGTGGAAC 377
.||.|.|.|||....||||.|.||||.|| |.||.||||| |||||
BL03980___ntd 334 GCTGCTTTTTTGAGCAAAAAGCATGTCATGGCTTCATCCAGC---GGAAC 380
BSNT_01793___ 378 CGATGCTATTATGATAGGTTTATTG-GCTTTAGG--------GTTAAACC 418
||||||.|| |.||.|.| |||..||| |||..| |
BL03980___ntd 381 CGATGCCAT--------GATTGTCGCGCTGAAGGCTGCGGGTGTTGGA-C 421
BSNT_01793___ 419 CAGGGGATGAAGTTATCATGCCGGCTAATAGCTTTTCAGCTACTGAAAAT 468
.|||.||||||||.||.|||||.||.||.||||||.|.||.||.|||||.
BL03980___ntd 422 AAGGTGATGAAGTCATTATGCCTGCAAACAGCTTTGCTGCAACGGAAAAC 471
BSNT_01793___ 469 GCTGTGTT---AGCTTTGGGAGGCGTTCCTATCTATGT-AGATATTAACC 514
||.|||.| |||| ||||||..|||.|| |.|.| .||||||.|||
BL03980___ntd 472 GCCGTGCTCGCAGCT---GGAGGCACTCCGAT-TTTCTGCGATATTGACC 517
BSNT_01793___ 515 CACAAACATTCTGCATCGATCCTGACA-AAATTGAAGAAGCAATAACTCC 563
|....|||||.|||||.|||||| .|| |||||||||.|....|.|||
BL03980___ntd 518 CTGTTACATTTTGCATGGATCCT-TCAGAAATTGAAGCATGTGTCACT-- 564
BSNT_01793___ 564 TT--ATACAAAGTTTATTCTACCTGTGCA--TTTATACGGAAAACATTCA 609
|| |.||.||.|..|||.|.|||||.|| ||||| |||||.|...|.
BL03980___ntd 565 TTGAAAACGAAATGCATTTTGCCTGTACACCTTTAT--GGAAAGCTGCCT 612
BSNT_01793___ 610 GACATGCAGCATATCCGTCAAATCGC--AAATCG-TTATGAATTAAAAG- 655
||||||.| |.|| ||.|| |||.|| |.||.||| |.|
BL03980___ntd 613 GACATGGA----AGCC-----ATTGCAAAAACCGCTGATAAAT---ACGG 650
BSNT_01793___ 656 --------TAATTGAAGATGCCTGCCAAGGAATTGGACTGACAGACTTAG 697
|.||||||||.||||||||.|..||.||..|..|.||..|.|
BL03980___ntd 651 CATCCCGATTATTGAAGACGCCTGCCAGGCGATCGGCGTTTCCGATCTGG 700
BSNT_01793___ 698 GAAAGTATGCAGACAT--CACTACATTAAGTTTTAATCCCTATAAGAATT 745
|||| |..|||.|.| |.|.|.||||||.||.|||||.|||||.|||.
BL03980___ntd 701 GAAA--AAACAGCCTTTGCTCCATATTAAGCTTCAATCCGTATAAAAATC 748
BSNT_01793___ 746 TGGGTGTATGTGGCAAGGCTGGGGCAATAGCAACTGATAATGAA------ 789
|.||....||.||.||.||.||.|||||.|..||.|||.||..|
BL03980___ntd 749 TCGGCACTTGCGGAAAAGCCGGCGCAATTGTGACGGATGATCCATCATTT 798
BSNT_01793___ 790 GAACTCGCTAAAAAATGCATTCAATTTAGTTATCACGGTTTTGAAGTAAA 839
|.|..||| ||||||..|||.||..||||||||.||||||.|.||
BL03980___ntd 799 GCATCCGC------ATGCATGGAATATATGTATCACGGCTTTGAACTGAA 842
BSNT_01793___ 840 TGTAAAAAATAAGAAAGTCATC-AATTTTGGATTTAATTCAAAAATGGAC 888
|..||||||||| ||||.|..| .|.|..||.|||||..|.||.||.||.
BL03980___ntd 843 TCAAAAAAATAA-AAAGGCGGCTGACTACGGCTTTAACGCTAAGATTGAT 891
BSNT_01793___ 889 AATTTACAGGCAGCAATTGGTTTAGAGAGAATGAAGTACCTTTCATTAAA 938
|||.|.||.||.||.|||||..|.|..||.|||||.||.|||||.|||||
BL03980___ntd 892 AATCTGCAAGCCGCTATTGGACTGGCAAGGATGAAATATCTTTCTTTAAA 941
BSNT_01793___ 939 CAACTTCAAAAGACTGTTCTTGGCGGATAGATACATTACCCAATTAGCAG 988
.||..|.||..|..|.|..||.||.|||.|.||.|||.|.| |||.||||
BL03980___ntd 942 TAATCTGAAGCGCTTATATTTAGCAGATCGTTATATTGCGC-ATTTGCAG 990
BSNT_01793___ 989 -AGT-TGCAGAATAAAGGCTTTATTGAATTACCAGAATTAAGTGAAGATC 1036
||| ||.|| |.|.|||..|.||..||||.||..||.|.|..||.||||
BL03980___ntd 991 CAGTATGAAG-ACAGAGGTCTGATCAAATTGCCTCAAATGACCGATGATC 1039
BSNT_01793___ 1037 ATGTATGGCATCTGTTTCCTATTAAGGTGAGAACAGAAGA-TAGAGCAGA 1085
|||||||||||.|||||.|.||||| ||.| || |.|.||
BL03980___ntd 1040 ATGTATGGCATTTGTTTACAATTAA-----------AATACTA-AACGGA 1077
BSNT_01793___ 1086 TATCATGACTAAATTAA----ATGA-----AGATTT--TGGTGTTCAAAC 1124
.|||.||||.||.|.|| |||| |.|||| |..|||.|||||
BL03980___ntd 1078 AATCGTGACCAAGTCAAAGATATGATGCTTAAATTTCATAATGTCCAAAC 1127
BSNT_01793___ 1125 AGATGTATATTATCCAATACTGTCTCAT-ATGCAAAAAACTCCTTTAGTA 1173
||||.||||.||.||.||..|.||.||| || |||||.||.||..|.|||
BL03980___ntd 1128 AGATATATACTACCCGATTTTATCCCATCAT-CAAAACACACCACTTGTA 1176
BSNT_01793___ 1174 CAGGACAAGTAT--GCAGGACTCCCAT---TG--GTTCATACGGAAAAGG 1216
.|.|.|||.||| ||| |.||| || |.|| ||.|||...|
BL03980___ntd 1177 AAAGCCAATTATCGGCA-----CACATCACTGCCGGTC--ACTGAATCAG 1219
BSNT_01793___ 1217 CTCATAGTCAGGTACTGCATTTGCCTTTATATCCG----TCATTTACTTT 1262
..||||..||..|.||.||..|.|||.|.|||||| || ||..|
BL03980___ntd 1220 TGCATAAACAAATGCTTCAGCTTCCTCTCTATCCGGGGCTC----ACCGT 1265
BSNT_01793___ 1263 AGAAGAACAAGACAGAGTAATGGAGGGACTGTTTCATGT--TATTAAGCA 1310
||||||||||||||.|||||||||||...|..||.|||| ||| ||
BL03980___ntd 1266 AGAAGAACAAGACAAAGTAATGGAGGCCTTAATTGATGTCGTAT----CA 1311
BSNT_01793___ 1311 AGAAATCGGAGTATAA 1326
.||
BL03980___ntd 1312 TGA------------- 1314
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