Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05651 and BL03979

See Amino acid alignment / Visit BSNT_05651 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:45
# Commandline: needle
#    -asequence dna-align/BSNT_05651___ywkE.1.5803.seq
#    -bsequence dna-align/BL03979___ywkE.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05651___ywkE-BL03979___ywkE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05651___ywkE-BL03979___ywkE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05651___ywkE
# 2: BL03979___ywkE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 929
# Identity:     594/929 (63.9%)
# Similarity:   594/929 (63.9%)
# Gaps:         124/929 (13.3%)
# Score: 1779.0
# 
#
#=======================================

BSNT_05651___      1 ATGAAGACGATATTCGAAGCCCTGAAATGGGCTTCTTCTTATTTAACCGA     50
                     |||||.||.||.||.||||||||.|..|||||||||||||||||.||.||
BL03979___ywk      1 ATGAAAACAATTTTTGAAGCCCTCAGGTGGGCTTCTTCTTATTTGACGGA     50

BSNT_05651___     51 AGCGGGAAGAGAAGAAAATGCGGCCGAGCTCCTATTGCTTTATGAT-ACC     99
                     ||||||||||||....|||||.||.||   ..|.|||||....||| |.|
BL03979___ywk     51 AGCGGGAAGAGACCGGAATGCCGCGGA---AATTTTGCTGACAGATCAGC     97

BSNT_05651___    100 GGA--ATGGAGAGAAGCAAGCTGCTCGCAAGCTTACAGGA----------    137
                     .||  ||.||..|.|||||.|||.|.||||||||.||.||          
BL03979___ywk     98 TGAACATCGACCGCAGCAAACTGTTGGCAAGCTTCCATGATGTCATATCA    147

BSNT_05651___    138 ---ACCGATT------GGTGAAGACGAACTGTATCGCTTTAAGCGTCACG    178
                        .|.||||      |||..|.|  ||.|.|.|||     |||.|||  
BL03979___ywk    148 GAGTCTGATTTTGCGAGGTTTAAA--AAATCTGTCG-----AGCTTCA--    188

BSNT_05651___    179 TTGAGATGCATAAAGAGGGCGTGCCGGTTCAATACATTATAGGAAAAGAG    228
                            .|||.||   ||.|||||.||||||||.||.|..|||||||||
BL03979___ywk    189 -------TCATCAA---GGAGTGCCTGTTCAATATATCACCGGAAAAGAG    228

BSNT_05651___    229 TTTTTTTATGGACGGGAATTTATGGTGAATGATGATGTGCTGATCCCGCG    278
                     |..|||||.|||.||||||||..|||.|||||..|.||.|||||.|||||
BL03979___ywk    229 TCCTTTTACGGAAGGGAATTTTCGGTAAATGAACACGTTCTGATTCCGCG    278

BSNT_05651___    279 GCCGGAAACTGAAGAAGTTGT-----CTTTCATTTGCTTGAA----AAAT    319
                     .||.|||||.||.|||||.||     ||.||.|||.|  |||    ||| 
BL03979___ywk    279 TCCTGAAACAGAGGAAGTCGTTGAAGCTGTCCTTTCC--GAAGCGGAAA-    325

BSNT_05651___    320 ATCGGAGTGTTTTTTCTGAAGACGGCA-AGCTCG-----AAGTTGTTGAC    363
                         |||   ||||||     ||||.| ||.|||     |||.|||.||.
BL03979___ywk    326 ----GAG---TTTTTC-----ACGGGACAGATCGTCTTAAAGCTGTCGAT    363

BSNT_05651___    364 GTTGGTACAGGGAGCGGCGCAATAGCCGTCACGCTTGCGCTTGAAAACCA    413
                     ||.||||||||.|||||.||.||.||.||.||.|||||||||||.|.||.
BL03979___ywk    364 GTCGGTACAGGAAGCGGGGCGATTGCAGTGACCCTTGCGCTTGAGAGCCC    413

BSNT_05651___    414 AAGCTTTTCTGTGTCGGCGGTCGATATTTCGAAAGAGGC-------GCTG    456
                     ..|.|||||.||..|||||...|||||||||.||.|.||       .|.|
BL03979___ywk    414 GCGTTTTTCCGTCACGGCGACGGATATTTCGGAACAAGCTTTAAGTACCG    463

BSNT_05651___    457 CAAGTCGCCTCTGCCAATGCAGAAAAACTCGGAGCGAATGTGCGCTTTTA    506
                     ||||.|       .|||.||.||....||.||.|||||.||| |.|||..
BL03979___ywk    464 CAAGAC-------ACAACGCTGACCGGCTTGGGGCGAAAGTG-GATTTCC    505

BSNT_05651___    507 TCAG-GGCGATCTGCTTGAGCCTTTTATTAAGGCGGGA---AAAAAAGCG    552
                     ||.| ||.|||.|||||||.||..||||   .|||.||   ||.|||||.
BL03979___ywk    506 TCTGCGGTGATTTGCTTGAACCGCTTAT---CGCGCGACAGAAGAAAGCT    552

BSNT_05651___    553 GATATCATTGTCTCAAACCCGCCATATATTTCAGAGGAAGAAATG-----    597
                     |||.||||.||.||.||.||.||.|||||.||.||||||||.|||     
BL03979___ywk    553 GATGTCATCGTTTCGAATCCACCTTATATATCCGAGGAAGACATGAGGAC    602

BSNT_05651___    598 GCTGATTTATCGGAAATTGTCCGTTTTCATGA----GCCGCTGC----AC    639
                     ||||     ||.||..|.||||||.|.|||||    ||||..||    ||
BL03979___ywk    603 GCTG-----TCAGATGTCGTCCGTCTCCATGAACCCGCCGGGGCTTTAAC    647

BSNT_05651___    640 GCACTCACCGATGGCGGAGACGGGCTGAAATTTTATAAGCGGTTTATGGA    689
                     |        ||.||.|..|||||..||.|.|||||||||||.||.|||.|
BL03979___ywk    648 G--------GACGGTGCTGACGGATTGCAGTTTTATAAGCGTTTCATGAA    689

BSNT_05651___    690 AGACATTCCGCTTGTTAT-GAAGGATAAAGTATTTGTCGTTTTTGAAATC    738
                     .||.|||||...|||.|| |.| |||.|.|.|.|.||.||.|||||||||
BL03979___ywk    690 GGAAATTCCATCTGTCATCGCA-GATCAGGCACTGGTGGTGTTTGAAATC    738

BSNT_05651___    739 GGCTGGAAACAGGGAGCGGCGGTCAAAGACCTGATCCTCAAGGCATTTAA    788
                     |||||||..|||||....||.||.||||||.||.|.|.|..|...|||..
BL03979___ywk    739 GGCTGGACTCAGGGGAATGCCGTTAAAGACATGTTTCACCGGTTCTTTCC    788

BSNT_05651___    789 GGGAGCGGAAGTGGAAGTGCTGAAAGATATTAATGGAAAAGACAGAACCA    838
                     .|..||.||.|||...|||..|||||||.||||||||||||||.|.|.|.
BL03979___ywk    789 TGATGCTGACGTGCGGGTGAAGAAAGATCTTAATGGAAAAGACCGCATCG    838

BSNT_05651___    839 TATGCGCTCTGATTCATAAAAATAAATAA    867
                     |.|||||..|.|||.|..||.|||..|||
BL03979___ywk    839 TCTGCGCGGTAATTGAACAACATAGTTAA    867


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05651 and BL03979

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
