Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05652 and BL03978
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:45
# Commandline: needle
# -asequence dna-align/BSNT_05652___prfA.1.5803.seq
# -bsequence dna-align/BL03978___prfA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05652___prfA-BL03978___prfA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05652___prfA-BL03978___prfA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05652___prfA
# 2: BL03978___prfA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1073
# Identity: 879/1073 (81.9%)
# Similarity: 879/1073 (81.9%)
# Gaps: 4/1073 ( 0.4%)
# Score: 3595.0
#
#
#=======================================
BSNT_05652___ 1 GTGTTAGACCGTTTAAAATCAATTGAAGAACGATACGAGAAATTAAATGA 50
||||||||||||||||||||.||.||.||.||.|||||.|||||||||||
BL03978___prf 1 GTGTTAGACCGTTTAAAATCGATAGAGGACCGGTACGAAAAATTAAATGA 50
BSNT_05652___ 51 GCTTTTGAGCGATCCAGAAGTAGTCAACGATCCGAAAAAGCTAAGAGAAT 100
.||.||.||||||||.||.||.||||||||||||||.|||||.|||||||
BL03978___prf 51 ACTATTAAGCGATCCGGAGGTTGTCAACGATCCGAAGAAGCTTAGAGAAT 100
BSNT_05652___ 101 ATTCAAAAGAGCAATCTGATATACAAGAAACAGTTGACGTATATAGACAA 150
||||.|||||.|||||||||.||||.|||||||||||.|||||.||||..
BL03978___prf 101 ATTCGAAAGAACAATCTGATTTACAGGAAACAGTTGAAGTATACAGACGT 150
BSNT_05652___ 151 TA-CAGAGATGCGTCAGAACAGCTG-GCTGATGCAAAAGCGATGCTTGAA 198
|| |..|| .|||||.||||||||| || |||||.|||||||||||||||
BL03978___prf 151 TATCGTAG-CGCGTCGGAACAGCTGAGC-GATGCTAAAGCGATGCTTGAA 198
BSNT_05652___ 199 GAGAAGCTGGATGCTGAGATGCGCGACATGGTGAAGGAAGAGATTTCTGA 248
||.|||||.||..|.||.||||||||.||||||||.||.||||||||.||
BL03978___prf 199 GAAAAGCTTGACTCCGACATGCGCGAGATGGTGAAAGAGGAGATTTCCGA 248
BSNT_05652___ 249 ACTTCAGAAGGAAACGGAAACACTGTCAGAACGGCTGAAGGTGCTCCTGA 298
|||.|||.|.||||..||..|.||..||||.|.|||||||||..|.||||
BL03978___prf 249 ACTGCAGGAAGAAATCGAGTCGCTCACAGATCAGCTGAAGGTATTGCTGA 298
BSNT_05652___ 299 TCCCGAAAGATCCTAATGACGACAAAAACGTTATCATGGAGATCCGCGGG 348
||||.||||||||.|||||.||||||||||||||||||||.||||||||.
BL03978___prf 299 TCCCTAAAGATCCGAATGATGACAAAAACGTTATCATGGAAATCCGCGGC 348
BSNT_05652___ 349 GCTGCGGGAGGCGAGGAAGCCGCTTTATTCGCGGGCAATCTGTACAGAAT 398
||.|||||.||.||.||.|||||||||||.||.|||||.||.|||.|.||
BL03978___prf 349 GCAGCGGGCGGAGAAGAGGCCGCTTTATTTGCCGGCAACCTTTACCGCAT 398
BSNT_05652___ 399 GTATTCCCGTTATGCTGAGCTTCAGGGCTGGAAAACAGAGGTCATGGAAG 448
|||...|||.||.||.|||||.||.||||||||||||||.||.|||||||
BL03978___prf 399 GTACAGCCGCTACGCAGAGCTCCAAGGCTGGAAAACAGAAGTGATGGAAG 448
BSNT_05652___ 449 CGAATGTAACCGGAACGGGCGGCTACAAAGAGATCATCTTTATGATTACA 498
|||||.|.||.||.||.|||||.||.|||||||||||.||||||||.|..
BL03978___prf 449 CGAATATGACAGGTACAGGCGGATATAAAGAGATCATTTTTATGATCAAT 498
BSNT_05652___ 499 GGAAGCGGCGCGTATTCTAAACTCAAATATGAAAACGGCGCCCACCGCGT 548
||.|.||||||.||.||.|..||.||.|||||.||||||||.||||||||
BL03978___prf 499 GGGAACGGCGCATACTCAAGGCTGAAGTATGAGAACGGCGCACACCGCGT 548
BSNT_05652___ 549 ACAGCGTGTTCCGGAAACAGAATCAGGCGGACGCATCCATACATCCACTG 598
||||||.|||||.||.||.|||||.|||||.|||||||||||||||||.|
BL03978___prf 549 ACAGCGCGTTCCAGAGACCGAATCCGGCGGGCGCATCCATACATCCACGG 598
BSNT_05652___ 599 CAACAGTGGCATGTCTTCCTGAGGCAGAAGAGGTAGAGGTCGACATCCAT 648
||||.||.||.||.||.|||||.||.|||||||||||.|||||.||.|||
BL03978___prf 599 CAACGGTAGCCTGCCTGCCTGAAGCGGAAGAGGTAGAAGTCGATATACAT 648
BSNT_05652___ 649 GAGAAGGATATCCGTGTCGATACATTTGCTTCAAGCGGACCGGGCGGACA 698
||.||.||.||.||.|||||.||.||.||.||.|||||.|||||.||.||
BL03978___prf 649 GAAAAAGACATTCGCGTCGACACCTTCGCATCGAGCGGTCCGGGAGGGCA 698
BSNT_05652___ 699 AAGCGTTAACACAACAATGTCTGCGGTTCGTCTGACTCACTTGCCGACAG 748
||||||.||.||.||.|||||.||.||.||||||||.|||.|.|||||||
BL03978___prf 699 AAGCGTCAATACGACGATGTCAGCCGTCCGTCTGACCCACCTTCCGACAG 748
BSNT_05652___ 749 GTGTTGTTGTATCATGCCAGGATGAAAAATCTCAAATTAAGAACAAAGAA 798
|||||||.||.||.|||||||||||.||||||||.||.||.|||||||||
BL03978___prf 749 GTGTTGTCGTGTCTTGCCAGGATGAGAAATCTCAGATCAAAAACAAAGAA 798
BSNT_05652___ 799 AAAGCAATGAAGGTTCTCCGTGCCAGAATCTATGATAAATTTCAGCAGGA 848
|||||.|||||||||||.||.||..||||.||.||.||||||||||||||
BL03978___prf 799 AAAGCGATGAAGGTTCTGCGCGCGCGAATTTACGACAAATTTCAGCAGGA 848
BSNT_05652___ 849 AGCCCAGGCTGAATATGATCAAACACGGAAATCAGCAGTCGGATCTGGTG 898
|||.|||||||||||||||||||..||||||||.||.||||||.|.||.|
BL03978___prf 849 AGCTCAGGCTGAATATGATCAAAACCGGAAATCCGCCGTCGGAACAGGAG 898
BSNT_05652___ 899 ACCGCTCTGAACGTATCCGCACATACAACTTCCCGCAAAACCGTGTGACG 948
||||||||||.||.||||||||.||.|||||.|||||||||||.||.||.
BL03978___prf 899 ACCGCTCTGAGCGCATCCGCACGTATAACTTTCCGCAAAACCGCGTTACC 948
BSNT_05652___ 949 GATCACAGAATCGGTTTGACGATTCAAAAGCTTGATCAGATTCTTGAAGG 998
||||||||.|||||.||||||||.||||||||.||.||.||.||||||||
BL03978___prf 949 GATCACAGGATCGGCTTGACGATCCAAAAGCTCGACCAAATCCTTGAAGG 998
BSNT_05652___ 999 AAAACTTGACGAAGTGGTTGAAGCGCTGATTGTTGAAGATCAGGCAAGCA 1048
.||.|||||.||||||.||||.||.||||||||.||.|||||||||||||
BL03978___prf 999 CAAGCTTGATGAAGTGATTGACGCCCTGATTGTAGAGGATCAGGCAAGCA 1048
BSNT_05652___ 1049 AGCTTCAGCAGTCGGAAGGTTAA 1071
|||||||||||.||||..|.|||
BL03978___prf 1049 AGCTTCAGCAGGCGGAGAGCTAA 1071
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