Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05655 and BL03977
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:46
# Commandline: needle
# -asequence dna-align/BSNT_05655___ywkB.1.5803.seq
# -bsequence dna-align/BL03977___ywkB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05655___ywkB-BL03977___ywkB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05655___ywkB-BL03977___ywkB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05655___ywkB
# 2: BL03977___ywkB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 994
# Identity: 707/994 (71.1%)
# Similarity: 707/994 (71.1%)
# Gaps: 71/994 ( 7.1%)
# Score: 2426.5
#
#
#=======================================
BSNT_05655___ 1 TTGAGCATCTTAGATATCTTAATCCTCCTGGCGCCGATCTTCTTTGTTAT 50
||||||.|.|||.||||.|||||||||||.|||||.||.||.||||||||
BL03977___ywk 1 TTGAGCTTTTTAAATATTTTAATCCTCCTTGCGCCAATATTTTTTGTTAT 50
BSNT_05655___ 51 CGTGCTGGGTTGGTTTGCAGGACATTTTGGAAGTTATGATGCCAAGTCGG 100
.|.||||||.||||||||.||.||.||||||||.||||||||.||.||.|
BL03977___ywk 51 TGCGCTGGGATGGTTTGCGGGTCACTTTGGAAGCTATGATGCTAAATCAG 100
BSNT_05655___ 101 CAAAAGGGGTAAGTACGTTAGTAACGAAATACGCACTTCCAGCTCACTT- 149
|||||||||||||||||.|.||||||||||||||.|||||.||.|||||
BL03977___ywk 101 CAAAAGGGGTAAGTACGCTCGTAACGAAATACGCGCTTCCGGCCCACTTT 150
BSNT_05655___ 150 -TATC--GCTGGTATTTTGACAACTTCCAGAAGTGAATTTTTATCA--CA 194
|||| || ||||||.|||| .|||.|||..||.||||| || ||
BL03977___ywk 151 GTATCAAGC----ATTTTGTCAAC-GCCAAAAGATAAGTTTTA-CAGCCA 194
BSNT_05655___ 195 AGTACCTTTAATGATTTCTTTAATTATTGGGATTGTTGGTTTCTATATCA 244
..|.||..|.||||||||.||..|.||.||.||.|||||.||.|| |.
BL03977___ywk 195 GATTCCGCTTATGATTTCATTGGTAATCGGTATCGTTGGATTTTA---CG 241
BSNT_05655___ 245 TCATTCTTTTG----GTTTGCAGATTTATTTTCAAGTATGATTTAACGAA 290
|.|||.||||| .|||.| |||||.|.||.||.||.||||||||..|
BL03977___ywk 242 TTATTATTTTGCTTCTTTTAC-GATTTTTGTTTAAATACGATTTAACAGA 290
BSNT_05655___ 291 CTCATCTGTATTTTCTTTGAACTCTGCACAGCCGACATTCGCATTTATGG 340
..|.||..|.||.||.||||||||.|||||||||||||||||.|||||||
BL03977___ywk 291 TGCTTCAATGTTCTCATTGAACTCAGCACAGCCGACATTCGCCTTTATGG 340
BSNT_05655___ 341 GTATCCCGGTATTGGGAAGCTTATTCGGAGCGAATGAAGTTGCGATTCCG 390
|.||.||.||||||||.|||.|.|||||...|.|.||||||||||||||.
BL03977___ywk 341 GCATTCCTGTATTGGGCAGCCTGTTCGGCATGCAGGAAGTTGCGATTCCA 390
BSNT_05655___ 391 ATCGCGGTCACAGGTATCGTGGTTAACGCGATTCTTGATCCGCTCGCGAT 440
||||||.|.||.||.||.||.||.||.|||||.||||||||.||.|||||
BL03977___ywk 391 ATCGCGATTACGGGAATTGTCGTAAATGCGATGCTTGATCCTCTTGCGAT 440
BSNT_05655___ 441 CATTATCGCTACTGTTGGTGAGTCTTCTAAGAA--------AAACGAAGA 482
|||..|||..||.||.||....|||||.||.|| ||||||.|
BL03977___ywk 441 CATCGTCGGAACCGTCGGCCGTTCTTCAAAAAAACAAACGGAAACGACG- 489
BSNT_05655___ 483 GAGTGGCGACAGCTTCTGGAAGATGACAGGAAAATCAATCCTGCATGGTC 532
||||||.|.||||||.||||||||||||||||..|.||.|||.
BL03977___ywk 490 -------GACAGCATTTGGAAGGTGACAGGAAAATCAATTTTACACGGTT 532
BSNT_05655___ 533 TTTGTGAGCCGCTTGCAGCTGCTCCGTTAATCAGTATGA-TCTTGGTGCT 581
|.|.|||.||||||||...|||.|||.|....|||||.| |||| |||.|
BL03977___ywk 533 TGTCTGAACCGCTTGCTTTTGCACCGCTTGCAAGTATCATTCTT-GTGTT 581
BSNT_05655___ 582 ----GGTTTTCAATTTCACTCTTCCTGA------GCTGGGTGTTAAAATG 621
|||.|.||| .||||||| ||.| ||||||
BL03977___ywk 582 ATTCGGTCTGCAA-------ATTCCTGAATTGCCGCAG------AAAATG 618
BSNT_05655___ 622 CTTGATCAGCTTGGAAGCACAACATCTGGTGTTGCTCTCTTTGCTGTTGG 671
||||||..|||.|||...||.||.||.||..|.||.||.||.||.||.||
BL03977___ywk 619 CTTGATATGCTCGGAGATACGACTTCAGGAATCGCCCTATTCGCAGTCGG 668
BSNT_05655___ 672 TGTTACCGTTGGTATTCGTAAAATTAAACTCAGTATGCCGGCTATCGGTA 721
.||.||.||.||.||.||.|||||||||.||||.|||||.||..|..|.|
BL03977___ywk 669 GGTGACTGTCGGAATCCGCAAAATTAAATTCAGCATGCCTGCCTTGAGCA 718
BSNT_05655___ 722 TTGCGTTACTAAAAGTTGCGGTTCAGCCTGCGTTAATGTTCCTGATTGCT 771
|.||.|||.|||||||.||.|.|||||||||.||||||||..||||.||.
BL03977___ywk 719 TCGCTTTATTAAAAGTCGCTGCTCAGCCTGCTTTAATGTTTGTGATCGCG 768
BSNT_05655___ 772 CTTGCTATCGGACTTCCGGCTGACCAAACAACAAAAGCAATCCTTCTTGT 821
.|.|...||||.|||.|..|||.|.|.|..||||||||..|.||.||.||
BL03977___ywk 769 ATGGTCGTCGGCCTTTCTTCTGCCGACATGACAAAAGCGGTTCTGCTCGT 818
BSNT_05655___ 822 TGCATTCCCTGGTTCTGCCGTTGCAGCCATGATTGCGAC--TCGTTTCGA 869
.|||||||||||||||||.||.||.|||||||||||.|| .|.||
BL03977___ywk 819 GGCATTCCCTGGTTCTGCTGTGGCGGCCATGATTGCTACAAACTTT---- 864
BSNT_05655___ 870 GAAA--CAAGAAGAAGAAACTGCAACTGCGTTTGTGGTCAGTGCGATTCT 917
|||| ||.||||..|||||.|||.|.|||||||||.||||||||.|.||
BL03977___ywk 865 GAAAGCCAGGAAGCGGAAACGGCATCCGCGTTTGTGATCAGTGCGGTGCT 914
BSNT_05655___ 918 GTCATTGATTTCACTTCCAATCATT-ATCGCGCTTACTGCGTAA 960
||||.|.|||||.||.||.|| ||| ||.||..||||.||.|||
BL03977___ywk 915 GTCAATTATTTCGCTGCCGAT-ATTGATTGCAATTACAGCTTAA 957
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