Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05655 and BL03977

See Amino acid alignment / Visit BSNT_05655 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:46
# Commandline: needle
#    -asequence dna-align/BSNT_05655___ywkB.1.5803.seq
#    -bsequence dna-align/BL03977___ywkB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05655___ywkB-BL03977___ywkB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05655___ywkB-BL03977___ywkB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05655___ywkB
# 2: BL03977___ywkB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 994
# Identity:     707/994 (71.1%)
# Similarity:   707/994 (71.1%)
# Gaps:          71/994 ( 7.1%)
# Score: 2426.5
# 
#
#=======================================

BSNT_05655___      1 TTGAGCATCTTAGATATCTTAATCCTCCTGGCGCCGATCTTCTTTGTTAT     50
                     ||||||.|.|||.||||.|||||||||||.|||||.||.||.||||||||
BL03977___ywk      1 TTGAGCTTTTTAAATATTTTAATCCTCCTTGCGCCAATATTTTTTGTTAT     50

BSNT_05655___     51 CGTGCTGGGTTGGTTTGCAGGACATTTTGGAAGTTATGATGCCAAGTCGG    100
                     .|.||||||.||||||||.||.||.||||||||.||||||||.||.||.|
BL03977___ywk     51 TGCGCTGGGATGGTTTGCGGGTCACTTTGGAAGCTATGATGCTAAATCAG    100

BSNT_05655___    101 CAAAAGGGGTAAGTACGTTAGTAACGAAATACGCACTTCCAGCTCACTT-    149
                     |||||||||||||||||.|.||||||||||||||.|||||.||.||||| 
BL03977___ywk    101 CAAAAGGGGTAAGTACGCTCGTAACGAAATACGCGCTTCCGGCCCACTTT    150

BSNT_05655___    150 -TATC--GCTGGTATTTTGACAACTTCCAGAAGTGAATTTTTATCA--CA    194
                      ||||  ||    ||||||.|||| .|||.|||..||.||||| ||  ||
BL03977___ywk    151 GTATCAAGC----ATTTTGTCAAC-GCCAAAAGATAAGTTTTA-CAGCCA    194

BSNT_05655___    195 AGTACCTTTAATGATTTCTTTAATTATTGGGATTGTTGGTTTCTATATCA    244
                     ..|.||..|.||||||||.||..|.||.||.||.|||||.||.||   |.
BL03977___ywk    195 GATTCCGCTTATGATTTCATTGGTAATCGGTATCGTTGGATTTTA---CG    241

BSNT_05655___    245 TCATTCTTTTG----GTTTGCAGATTTATTTTCAAGTATGATTTAACGAA    290
                     |.|||.|||||    .|||.| |||||.|.||.||.||.||||||||..|
BL03977___ywk    242 TTATTATTTTGCTTCTTTTAC-GATTTTTGTTTAAATACGATTTAACAGA    290

BSNT_05655___    291 CTCATCTGTATTTTCTTTGAACTCTGCACAGCCGACATTCGCATTTATGG    340
                     ..|.||..|.||.||.||||||||.|||||||||||||||||.|||||||
BL03977___ywk    291 TGCTTCAATGTTCTCATTGAACTCAGCACAGCCGACATTCGCCTTTATGG    340

BSNT_05655___    341 GTATCCCGGTATTGGGAAGCTTATTCGGAGCGAATGAAGTTGCGATTCCG    390
                     |.||.||.||||||||.|||.|.|||||...|.|.||||||||||||||.
BL03977___ywk    341 GCATTCCTGTATTGGGCAGCCTGTTCGGCATGCAGGAAGTTGCGATTCCA    390

BSNT_05655___    391 ATCGCGGTCACAGGTATCGTGGTTAACGCGATTCTTGATCCGCTCGCGAT    440
                     ||||||.|.||.||.||.||.||.||.|||||.||||||||.||.|||||
BL03977___ywk    391 ATCGCGATTACGGGAATTGTCGTAAATGCGATGCTTGATCCTCTTGCGAT    440

BSNT_05655___    441 CATTATCGCTACTGTTGGTGAGTCTTCTAAGAA--------AAACGAAGA    482
                     |||..|||..||.||.||....|||||.||.||        ||||||.| 
BL03977___ywk    441 CATCGTCGGAACCGTCGGCCGTTCTTCAAAAAAACAAACGGAAACGACG-    489

BSNT_05655___    483 GAGTGGCGACAGCTTCTGGAAGATGACAGGAAAATCAATCCTGCATGGTC    532
                            ||||||.|.||||||.||||||||||||||||..|.||.|||.
BL03977___ywk    490 -------GACAGCATTTGGAAGGTGACAGGAAAATCAATTTTACACGGTT    532

BSNT_05655___    533 TTTGTGAGCCGCTTGCAGCTGCTCCGTTAATCAGTATGA-TCTTGGTGCT    581
                     |.|.|||.||||||||...|||.|||.|....|||||.| |||| |||.|
BL03977___ywk    533 TGTCTGAACCGCTTGCTTTTGCACCGCTTGCAAGTATCATTCTT-GTGTT    581

BSNT_05655___    582 ----GGTTTTCAATTTCACTCTTCCTGA------GCTGGGTGTTAAAATG    621
                         |||.|.|||       .|||||||      ||.|      ||||||
BL03977___ywk    582 ATTCGGTCTGCAA-------ATTCCTGAATTGCCGCAG------AAAATG    618

BSNT_05655___    622 CTTGATCAGCTTGGAAGCACAACATCTGGTGTTGCTCTCTTTGCTGTTGG    671
                     ||||||..|||.|||...||.||.||.||..|.||.||.||.||.||.||
BL03977___ywk    619 CTTGATATGCTCGGAGATACGACTTCAGGAATCGCCCTATTCGCAGTCGG    668

BSNT_05655___    672 TGTTACCGTTGGTATTCGTAAAATTAAACTCAGTATGCCGGCTATCGGTA    721
                     .||.||.||.||.||.||.|||||||||.||||.|||||.||..|..|.|
BL03977___ywk    669 GGTGACTGTCGGAATCCGCAAAATTAAATTCAGCATGCCTGCCTTGAGCA    718

BSNT_05655___    722 TTGCGTTACTAAAAGTTGCGGTTCAGCCTGCGTTAATGTTCCTGATTGCT    771
                     |.||.|||.|||||||.||.|.|||||||||.||||||||..||||.||.
BL03977___ywk    719 TCGCTTTATTAAAAGTCGCTGCTCAGCCTGCTTTAATGTTTGTGATCGCG    768

BSNT_05655___    772 CTTGCTATCGGACTTCCGGCTGACCAAACAACAAAAGCAATCCTTCTTGT    821
                     .|.|...||||.|||.|..|||.|.|.|..||||||||..|.||.||.||
BL03977___ywk    769 ATGGTCGTCGGCCTTTCTTCTGCCGACATGACAAAAGCGGTTCTGCTCGT    818

BSNT_05655___    822 TGCATTCCCTGGTTCTGCCGTTGCAGCCATGATTGCGAC--TCGTTTCGA    869
                     .|||||||||||||||||.||.||.|||||||||||.||  .|.||    
BL03977___ywk    819 GGCATTCCCTGGTTCTGCTGTGGCGGCCATGATTGCTACAAACTTT----    864

BSNT_05655___    870 GAAA--CAAGAAGAAGAAACTGCAACTGCGTTTGTGGTCAGTGCGATTCT    917
                     ||||  ||.||||..|||||.|||.|.|||||||||.||||||||.|.||
BL03977___ywk    865 GAAAGCCAGGAAGCGGAAACGGCATCCGCGTTTGTGATCAGTGCGGTGCT    914

BSNT_05655___    918 GTCATTGATTTCACTTCCAATCATT-ATCGCGCTTACTGCGTAA    960
                     ||||.|.|||||.||.||.|| ||| ||.||..||||.||.|||
BL03977___ywk    915 GTCAATTATTTCGCTGCCGAT-ATTGATTGCAATTACAGCTTAA    957


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