Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05682 and BL03965
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:48
# Commandline: needle
# -asequence dna-align/BSNT_05682___ywjE.1.5803.seq
# -bsequence dna-align/BL03965___ywjE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05682___ywjE-BL03965___ywjE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05682___ywjE-BL03965___ywjE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05682___ywjE
# 2: BL03965___ywjE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1304
# Identity: 809/1304 (62.0%)
# Similarity: 809/1304 (62.0%)
# Gaps: 220/1304 (16.9%)
# Score: 2166.5
#
#
#=======================================
BSNT_05682___ 1 ATGAAAGTATTTATCGT---GATTATGATCATTGTCGTTATTTTCTTTGC 47
.|.|| |.|||||||.||.|| .|.||||||...|
BL03965___ywj 1 ------------TTGGTGCCGCTTATGATTATGGT--ATGTTTTCTCATC 36
BSNT_05682___ 48 CTTGATTCT---GCTTGATATCTTCA--TGGGCCG---TGCCGGATACAG 89
| ||.|||| |||.|||.|| || |.||||| .||| .|..||
BL03965___ywj 37 C-TGCTTCTTGCGCTCGATTTC--CATTTTGGCCGCAAAGCC--TTTGAG 81
BSNT_05682___ 90 AAAAAAGGCGTACGAGCCTGTTTTTTCAAAAAAGAAGAGTGACATCGAAT 139
||.||| ||.||||||||.|||||||||.|.|||||.||.||.||.|||.
BL03965___ywj 82 AAGAAA-GCCTACGAGCCCGTTTTTTCAGAGAAGAAAAGCGATATTGAAC 130
BSNT_05682___ 140 TGATCCACTGCGGCGCTGATCTCGT-TGAGCGGATGATGAAGGATATTCG 188
||||.||....||.|..|| ||.|| |||||||.||.||.|.||.||.||
BL03965___ywj 131 TGATTCATAATGGAGAAGA-CTTGTGTGAGCGGCTGCTGGATGACATCCG 179
BSNT_05682___ 189 CCAGGCCGCCTCTTCTGTTCACATGATGTTTTTTATTATGAAAAATGATG 238
||||||||..||.||.||.||..|.|||||||.||||.||||.||.||||
BL03965___ywj 180 CCAGGCCGAATCGTCGGTGCATGTCATGTTTTATATTGTGAAGAACGATG 229
BSNT_05682___ 239 AGGTCAGCCACAATATGTAT-----ACCTTGCTGAAAACAAAAGCCCAAG 283
|..|||||| .||.|| |...|||||||....|||||..||.
BL03965___ywj 230 ACATCAGCC-----TTGAATTTTTGAAGGTGCTGAAGGATAAAGCGAAAT 274
BSNT_05682___ 284 CTGGCGTATCCGTTTATTTGCTTCTGGAT--------TGGGCGGGCTGCC 325
|.|||||||.|||....||||| ||| |.||||.|.||..
BL03965___ywj 275 CCGGCGTATGCGTACGATTGCT----GATCGACCGGATCGGCGCGATGAA 320
BSNT_05682___ 326 GGGCAATTAAAAAAACGGCGCTGCAGACGATGAAA-AATGCCGGCGTCCA 374
||..|| .|||||||| ||.||.|.|.| ||||| ||.| |||.||.||
BL03965___ywj 321 GGTGAA-GAAAAAAAC-GCTCTCCGGCC--TGAAACAAAG-CGGTGTGCA 365
BSNT_05682___ 375 TGT--------CCATGTGATGAATCG----TCCCCGTTTTCCTTTTTTCT 412
.|| ||| |..|..|| ||||| |.|||||
BL03965___ywj 366 CGTTTTTTTCGCCA----ACAAGCCGGGCTTCCCC--------TATTTCT 403
BSNT_05682___ 413 TTTTTCAC-------ATGCAAAAACGGAATCACCGGAAGATTACGGTGAT 455
||| || ||||.| |||||||.||.||.||..|.||.||
BL03965___ywj 404 TTT---ACCGGCTGAATGCGA----GGAATCATCGAAAAATCGCCGTCAT 446
BSNT_05682___ 456 AGACGGAAAAATCGGTTATATCGGCGGGTTTAACATCGCCGAAGAATATC 505
|||||||||.|||||.|||.|.|||||.|||||||||||..|||||||.|
BL03965___ywj 447 AGACGGAAAGATCGGCTATGTGGGCGGATTTAACATCGCGAAAGAATACC 496
BSNT_05682___ 506 TTGGAAAGAAGGCGAAGTTCGGCAATTGGGAGGATTATCATCTGCGCATG 555
||||.||.||.|||.|.|||||....|||.|||||||.|||.||||.|||
BL03965___ywj 497 TTGGTAAAAAAGCGGAATTCGGACCGTGGAAGGATTACCATTTGCGAATG 546
BSNT_05682___ 556 ATGGGAGAAGGCGT-----ACATGATCTTCAAACGCTTTTTGCTTCTGAT 600
|.|||||||||||| ||.|| |..||.| |||||...||.||.
BL03965___ywj 547 ACGGGAGAAGGCGTTGCCGACTTG--CAGCACA---TTTTTATATCGGAC 591
BSNT_05682___ 601 CTAAAACGA--------------AATACCGGAATCGAACTGGGTTCGGAT 636
.|.|||.|| ||..|||| |.|||.| ||.||
BL03965___ywj 592 TTCAAAAGAGAAGCGCCGCAGGCAAAGCCGG---CCAACAG----CGTAT 634
BSNT_05682___ 637 GTTTGGCCAAAGCTTCAGCAAGGGGCTATTTCTCACAAGATATATGCGAC 686
||..||| |||.||||||||.|||.|..|.||.|..|...|||||||
BL03965___ywj 635 -TTCCGCC---GCTGCAGCAAGGAGCTGTCACCCATACAACCCATGCGAC 680
BSNT_05682___ 687 CGACGGTTATTCCCTTGA--AAACATATACTTGGCCAACATT-------- 726
..|.||.|.|||.||.|| |||.|||.|.|| ||||
BL03965___ywj 681 AAAGGGATTTTCTCTAGAGGAAAAATACATTT------CATTTATCGAAC 724
BSNT_05682___ 727 --GCACAAGCGAAGAATCGCCTTACGGTTTGCACGCCTTATTACATTCCA 774
|||.||| .||||||| |.|.||||||||||.||.||.|||||
BL03965___ywj 725 AGGCAAAAG-AAAGAATC-----ATGATTTGCACGCCGTACTATATTCC- 767
BSNT_05682___ 775 TCAAAACC--GCTT--CAAGAGGCCCTTAT-TAACGCAAGAAAAAACGGC 819
.|.|| |||| ||..||||..||.| |.| ||.||..|||..|||
BL03965___ywj 768 ---GAGCCCGGCTTTGCAGCAGGCTGTTCTCTCA-GCCAGGGAAAGGGGC 813
BSNT_05682___ 820 GT-ATCCGTGAGAATC----ATTGTACCGATGAAATCAGACCATCCGCTG 864
|| || |||| || .|.||.|||||||||.|.||.||||||||.
BL03965___ywj 814 GTGAT-CGTG----TCGGTTCTCGTGCCGATGAAACCCGATCATCCGCTT 858
BSNT_05682___ 865 GTACGAGAAGCAGCTTTTACGTATTATTCGGAGCTCTTGGATGCCGGCTG 914
||...|||.||.||.|..|||.|.|.|.|.|..||.||..|.||.|||||
BL03965___ywj 859 GTCAAAGAGGCCGCCTACACGCACTTTCCAGCCCTTTTAAAAGCGGGCTG 908
BSNT_05682___ 915 TCT-TATTTATCGTTATTATCA-AGGATTTTATCATGTAAAAGCCCTCAT 962
|| ||||||.||.||.|| || |||.||||||||||.||||||..|.||
BL03965___ywj 909 -CTATATTTACCGGTACTA-CAGAGGCTTTTATCATGCAAAAGCATTAAT 956
BSNT_05682___ 963 CATAGACGAC---CATCTCAGCATTATCGGAACAGCCAACTTCGATAAAC 1009
|.|.||.||| |||.| .||.|||||||||.|.||.||.||.||..
BL03965___ywj 957 CGTCGATGACCGGCATGT---GATGATCGGAACATCGAATTTTGACAACA 1003
BSNT_05682___ 1010 GAAGCCTGTTTTTAAATGAAGAGGTGAATGTCGAAATTGATGACGAAGCG 1059
|.|||||||||.|.|||||.||.||||||||||..||..||||..|||..
BL03965___ywj 1004 GGAGCCTGTTTCTCAATGATGAAGTGAATGTCGTCATCCATGATAAAGAC 1053
BSNT_05682___ 1060 TTTACAAGTGAAGTCTATGCCACGATTG---AGG--AGGATATGAAAAAG 1104
|..||||...||.|| |.|.||| |.| ||| ||.|| ||||.|.|
BL03965___ywj 1054 TGGACAAAGCAATTC--TTCGACG-TCGTCAAGGAAAGCAT-TGAACACG 1099
BSNT_05682___ 1105 TCGGAGCGGCTGACGATGGAG-GATTTCAGC-AAGCGCACATTCAGGCAG 1152
|.||||..|||||.|.|||| |.|.| || |||||..|..|.|.||||
BL03965___ywj 1100 -CCGAGCTTCTGACAAAGGAGCGGTAT--GCGAAGCGGCCGGTGATGCAG 1146
BSNT_05682___ 1153 C-GCCCGGCGGAATGGCTCGGCAGGGC-------ATTATC-TTATTTCTT 1193
| |||||.| |||||||| ||| ||| || ||.||| ||
BL03965___ywj 1147 CGGCCCGTC-GAATGGCT------GGCGAAATCGATT-TCATTCTTT-TT 1187
BSNT_05682___ 1194 ATAA 1197
||||
BL03965___ywj 1188 ATAA 1191
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