Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05685 and BL03964

See Amino acid alignment / Visit BSNT_05685 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:48
# Commandline: needle
#    -asequence dna-align/BSNT_05685.1.5803.seq
#    -bsequence dna-align/BL03964___ywjC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05685-BL03964___ywjC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05685-BL03964___ywjC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05685
# 2: BL03964___ywjC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 288
# Identity:     131/288 (45.5%)
# Similarity:   131/288 (45.5%)
# Gaps:         108/288 (37.5%)
# Score: 365.0
# 
#
#=======================================

BSNT_05685         0 --------------------------------------------------      0
                                                                       
BL03964___ywj      1 ATGAACCAAGCAGAGTCGATTAAACTCCGCGCCCAATCGATGACGTTAAA     50

BSNT_05685         1 ----------------------ATGTGCCATTCCGGAAGCCACGAGGTTT     28
                                           .|.||||..||.|..||.||..||.|.|
BL03964___ywj     51 AAACTTGATTGAGCTGTACAAGCTTTGCCGCTCAGCCAGACATCAGCTAT    100

BSNT_05685        29 ATATTTATTCAAAGAAAACGATGTGCAAAATCAAAAGCTTAATTGAGCTT     78
                     ||||.|..||||..|||||||||||||||||||||...|||||||||||.
BL03964___ywj    101 ATATATGCTCAAGAAAAACGATGTGCAAAATCAAAGATTTAATTGAGCTG    150

BSNT_05685        79 GAAACATTCCGCATGGCTCATAATGAAAAGGAATATTTGATCGTAGTTGA    128
                     ||||..|||.|.|||||..||...|||||.||.|...||||.||..|.||
BL03964___ywj    151 GAAATGTTCAGAATGGCCAATCGCGAAAATGAGTGCCTGATTGTCATCGA    200

BSNT_05685       129 AGGAACAAAAGCATCACAGCTCATTGAA-----AAATTCCAAAATCTC-A    172
                     |||.|.||..|   |.|||      |||     |||    ||||.|.| |
BL03964___ywj    201 AGGGAAAATGG---CGCAG------GAATTAGTAAA----AAAAGCACAA    237

BSNT_05685       173 TCGA-GCCTGCTGAGAGAGAAGCGCTC--------TAA    201
                     |||| .|.|.||||        |||||        |||
BL03964___ywj    238 TCGATTCTTTCTGA--------CGCTCAAGTTCAATAA    267


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