Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05756 and BL03960

See Amino acid alignment / Visit BSNT_05756 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:51
# Commandline: needle
#    -asequence dna-align/BSNT_05756___rsfA.1.5803.seq
#    -bsequence dna-align/BL03960___rsfA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05756___rsfA-BL03960___rsfA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05756___rsfA-BL03960___rsfA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05756___rsfA
# 2: BL03960___rsfA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 822
# Identity:     590/822 (71.8%)
# Similarity:   590/822 (71.8%)
# Gaps:          81/822 ( 9.9%)
# Score: 2135.0
# 
#
#=======================================

BSNT_05756___      1 ATGACAAAACAGCGACAAGACGCTTGGTCAGAGGAAAACGAT---CTGCT     47
                     |||   |||||..||||||||||||||||.||||||||.|||   |||||
BL03960___rsf      1 ATG---AAACAAAGACAAGACGCTTGGTCTGAGGAAAATGATTTACTGCT     47

BSNT_05756___     48 TTTAGCCGAAACAGTGCTTCGGCATGTGAGGGAGGGCAGCACTCAGCTGA     97
                     |   ||.|||||.||..|.||||||||.|||||.||.|||||.|||||||
BL03960___rsf     48 T---GCTGAAACGGTATTGCGGCATGTCAGGGAAGGGAGCACACAGCTGA     94

BSNT_05756___     98 ACGCCTTTGAAGAAGTCGGCGATAAATTAAACCGGACATCCGCAGCCTGC    147
                     |||||||.||.||||||||.||.|.|.|.|||.|||||||.||.||||||
BL03960___rsf     95 ACGCCTTCGAGGAAGTCGGAGACAGACTGAACAGGACATCAGCCGCCTGC    144

BSNT_05756___    148 GGATTCAGATGGAACGCAGTGGTCCGCCATCAATATGAAAAAGCGCTTCA    197
                     ||.||.||||||||||||||.||||||||.|||||.||||||||..|.||
BL03960___rsf    145 GGTTTTAGATGGAACGCAGTTGTCCGCCACCAATACGAAAAAGCATTGCA    194

BSNT_05756___    198 GCTTGCGAAGAAACAACGAAAACAGCGGATGAGAGCGCTCGGAAACGGGC    247
                     |||.||.||.|||||..|.||.||..|.|||.|.||.|||||||||||.|
BL03960___rsf    195 GCTGGCTAAAAAACAGAGGAAGCAAAGAATGCGCGCCCTCGGAAACGGAC    244

BSNT_05756___    248 AGCCCGCGAAAAAAAGATTATTATATCAGCCTCCTGCCGTT-------GA    290
                     ||||.|||||||||.|.||||||||..||||    ||||.|       .|
BL03960___rsf    245 AGCCGGCGAAAAAACGCTTATTATACAAGCC----GCCGGTCGAAACGAA    290

BSNT_05756___    291 TCCTGAA-ATCATTCAAGAAACCGCT-----GCAGAAGA--------GCC    326
                     |.||||| .||.|.| |||||.||.|     ||||||||        ||.
BL03960___rsf    291 TGCTGAACCTCCTGC-AGAAAGCGTTGTTGAGCAGAAGAAAGCAACCGCA    339

BSNT_05756___    327 GGTTAAAACGGAAACACCTTCTGTCGAAAATGAGCAACCTTTAATGTCTG    376
                     |.||.||.||  |||                 ||||.||   .||..|..
BL03960___rsf    340 GATTCAAGCG--AAC-----------------AGCAGCC---GATCGCCA    367

BSNT_05756___    377 GCGAACATATGCCTTTTGTTGATGAAAGCTTTAAGGAAGAGTTAGCTAGT    426
                     ||||.|||.||||||.|||||||||.||||||||.|||||||||||||||
BL03960___rsf    368 GCGAGCATCTGCCTTATGTTGATGAGAGCTTTAAAGAAGAGTTAGCTAGT    417

BSNT_05756___    427 CTATCACACTTATTGTCTCCTCAAA-CACCTGCAG--CTGC------GCC    467
                     .||||.|||  .||.|.||..|||| ||.|.||||  |.||      |||
BL03960___rsf    418 TTATCTCAC--CTTCTATCGCCAAATCAGCCGCAGGCCGGCCATACAGCC    465

BSNT_05756___    468 -----------TGAGATGACGATGAATGATGTGATCCGCTTCCTGCAGAA    506
                                .||.||||||||..||||||||||||||||||||||.||
BL03960___rsf    466 GATACATCGAAAGACATGACGATCGATGATGTGATCCGCTTCCTGCAAAA    515

BSNT_05756___    507 TTACGAAGGCAATAACGAGCAATCATCAGCATTAAAAATGGAAAACGAGC    556
                     .||...|||.||..|.||.|||.|..|.||.||||||||||||||.||.|
BL03960___rsf    516 CTATACAGGAAACGAAGAACAAACTGCCGCTTTAAAAATGGAAAATGAAC    565

BSNT_05756___    557 GTTTAAAGAAAGAAAATCAGGAATTGCAAAACAAAACAGAGCAGCTAGAG    606
                     |||||||..|.|||||..|.|||.||...||.|||...||..||||.||.
BL03960___rsf    566 GTTTAAAACAGGAAAACGAAGAACTGACGAAGAAAGTTGAAAAGCTTGAA    615

BSNT_05756___    607 GCAGAAGTTCAAAAGCTTGAAAAAGACCAAAAAACGATCCAAGAAGATTA    656
                     ||.|||||..|||||||.|||||||||||.|.|||.|||||.|||||.||
BL03960___rsf    616 GCGGAAGTCAAAAAGCTGGAAAAAGACCAGACAACCATCCAGGAAGACTA    665

BSNT_05756___    657 TGAAACCTTGGTGAAAATTATGAACAGAGCCAGAAAGCTAGTTTTATTTG    706
                     .|||||..|.||.||||||||||||.|.||.|||||.|||||||||||.|
BL03960___rsf    666 CGAAACGCTCGTAAAAATTATGAACCGTGCAAGAAAACTAGTTTTATTCG    715

BSNT_05756___    707 AAGAAGATGAACATGCCTCTCCGTCCTTCAAAATGGACCGGAACGGCAAT    756
                     |||||||.|||||.||..|.||..||||||||||||||||||||||||||
BL03960___rsf    716 AAGAAGACGAACACGCTGCGCCCGCCTTCAAAATGGACCGGAACGGCAAT    765

BSNT_05756___    757 TTAGAAAAATTAGCGGAATGA-    777
                     |||||||||.|.||.|||| | 
BL03960___rsf    766 TTAGAAAAAATGGCTGAAT-AG    786


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05756 and BL03960

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
