Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02045 and BL03959
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:32
# Commandline: needle
# -asequence dna-align/BSNT_02045___yjdJ.1.5803.seq
# -bsequence dna-align/BL03959___yjdJ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02045___yjdJ-BL03959___yjdJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02045___yjdJ-BL03959___yjdJ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02045___yjdJ
# 2: BL03959___yjdJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 377
# Identity: 210/377 (55.7%)
# Similarity: 210/377 (55.7%)
# Gaps: 94/377 (24.9%)
# Score: 485.0
#
#
#=======================================
BSNT_02045___ 1 GTGAAGGGAATAT-TTTTA---GTTGTTCAGCTTGG----------ATTT 36
.||||| |.| ||||| |..||||||.|.|| .|||
BL03959___yjd 1 ATGAAG----TTTGTTTTATATGCGGTTCAGTTCGGCACTGCGGCCCTTT 46
BSNT_02045___ 37 TCTATTATGGTATTTCTGTTTTTAGCTGC--TGTTAA-TTGGTATCAAGG 83
|.|||.|||||| |||| ||..|| .|||||||||||
BL03959___yjd 47 ----------TGTTTTTGTTTT---CTGCATTGGCAAGCTGGTATCAAGG 83
BSNT_02045___ 84 AAGCGAGCTTGTTTCAGAT--CGATTTGATTGGAACTATACTGCTAAACT 131
.||||||||| ||..||.| || |..||.|||||.|||||.||.||..|
BL03959___yjd 84 CAGCGAGCTT-TTAAAGGTGCCG-TGGGAGTGGAAATATACAGCCAAGTT 131
BSNT_02045___ 132 CTCAAAACTGCTAAATGGAATTGATGCCGTCA-----GCAGCCCCAAACA 176
..|||....|||..|.|||...||..||.|.| ||| ||.| |
BL03959___yjd 132 TACAAGTTGGCTGTACGGAGAGGACTCCATTAAAAACGCA----CATA-A 176
BSNT_02045___ 177 AATTTCACAGCTTGATTTTTTCATCTACTCCGCTAA--ATA------CTA 218
.|||||||||||||||||||||.||||..|.||.|| ||| |.|
BL03959___yjd 177 TATTTCACAGCTTGATTTTTTCGTCTATGCGGCCAAGCATACGCCGGCAA 226
BSNT_02045___ 219 CCCTGTTATGAGTGCGTTAATGATCATCTCCTT--CTTATAT----GTTC 262
|| ||||| .||||||..|.||...|| |.||||| |.|.
BL03959___yjd 227 CC--GTTAT------TTTAATGGCCGTCAGTTTGGCGTATATCATCGCTT 268
BSNT_02045___ 263 TGGCCGCTCTTTTTTTACTTATATACTCAGTCAA-----ATGCAATAAGC 307
||||.| |||||.|.|||| |||| |||.||.|.|.
BL03959___yjd 269 TGGCGG-----------CTTATCTTCTCA-TCAAAACATATGTAAAACGA 306
BSNT_02045___ 308 AAGAGATTCATTTGGACTGCTGA---- 330
||.|| |..||.||..||.|.
BL03959___yjd 307 AAAAG---CGCTTCGAGCGCAGCATAA 330
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