Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05812 and BL03952
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:53
# Commandline: needle
# -asequence dna-align/BSNT_05812___ywdH.1.5803.seq
# -bsequence dna-align/BL03952___ywdH.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05812___ywdH-BL03952___ywdH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05812___ywdH-BL03952___ywdH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05812___ywdH
# 2: BL03952___ywdH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1479
# Identity: 947/1479 (64.0%)
# Similarity: 947/1479 (64.0%)
# Gaps: 204/1479 (13.8%)
# Score: 2802.5
#
#
#=======================================
BSNT_05812___ 1 --------ATGAACAGCATCCCCTCTAT---------CATCAGCAAGCAT 33
|.||||| .||||.|| |.|.|.|.||||
BL03952___ywd 1 ATGGCAGAACGAACA-----ACCTCCATCGAAACGACCGTTACCGAGCA- 44
BSNT_05812___ 34 AAAGC-CTATTTT----GCGGCGGGACATACGAGACCGCTTG--AATCG- 75
||||| .|||||| ||| |||..|.||.|| |..||| |||||
BL03952___ywd 45 AAAGCAATATTTTTTAAGCG--GGGCAACACTAG--CTGTTGAAAATCGT 90
BSNT_05812___ 76 -------AGACTGAACATTTTGCGAAA----GCTGAAACAAGCCGTCAGA 114
|| ||.|||||| |.||| ||||.||.|| |||
BL03952___ywd 91 CTGGAACAG-CTCAACATT---CTAAAAGATGCTGTAAAAA------AGA 130
BSNT_05812___ 115 ACTCATGAAGCCGATCTCATA---GCCGCTCTCTACCAGGATCTCCACAA 161
||||| |.|| .|||| |..||.||..|..|.|||||..|.||
BL03952___ywd 131 ----ATGAA-CGGA--ACATACTTGAGGCCCTTCAGAAAGATCTTAATAA 173
BSNT_05812___ 162 ATCCGAGCAAGAAGCATACTCAACAGAAATCGGAATCGTCTTGGAGGAAA 211
|||.|||||.|||||.||....||.|||||.||.||.||..||||.||||
BL03952___ywd 174 ATCAGAGCACGAAGCCTATATGACGGAAATAGGCATTGTACTGGAAGAAA 223
BSNT_05812___ 212 TCAGCTTTGTCATGAAACGGCTGAGAAAATGGTCCAAGCCGAAACGAGTC 261
||.||||..|||..|.|||..|.|.|||||||.||||.||||||...|.|
BL03952___ywd 224 TCCGCTTCATCAGCAGACGATTAAAAAAATGGGCCAAACCGAAAAAGGCC 273
BSNT_05812___ 262 AAAAC-GCCGCT--GACTCATCTAGGCTCCAAAAGCATCATCATTCCTGA 308
||||| ||||.| | |.|||| ||.||.|||||||||.||||||||||
BL03952___ywd 274 AAAACGGCCGTTTCG-CACATC--GGTTCAAAAAGCATCGTCATTCCTGA 320
BSNT_05812___ 309 GCCGTATGGAACCGTTTTGGTGATTGCACCTTGGAACTATCCCTTGCAGC 358
|||.||.||.||.|||.||.|.||.||.||.|||||||||||.||.||||
BL03952___ywd 321 GCCTTACGGCACGGTTCTGATCATCGCGCCATGGAACTATCCGTTTCAGC 370
BSNT_05812___ 359 TGGCGCTTTCTCCGTTGATTGGAGCCATTGCGGCGGGGAACACGGTCGTT 408
|.||..|.||.||..||||.||.||..||||.||||||||.||.|.|||.
BL03952___ywd 371 TTGCCGTCTCGCCCCTGATCGGCGCACTTGCTGCGGGGAATACCGCCGTC 420
BSNT_05812___ 409 CTCAAGCCATCAGAATATACGCCGGCTGTTTCTGCTATTCTTTCCAAACT 458
.||||.||.||.||...|.|.||.||.||.||..|..||.|.|||.|..|
BL03952___ywd 421 ATCAAACCGTCTGAGCTTGCTCCCGCCGTATCAACCGTTATATCCGAGAT 470
BSNT_05812___ 459 CATCAGCAG-CGTTTTTCCTACTGATTATGT---CGCTATGGCAGAAGGC 504
.|||| .|| ..|.|||||..|.||.||||| ||.||| .|||||
BL03952___ywd 471 GATCA-AAGATATCTTTCCGCCCGAATATGTGTCCGTTAT---TGAAGG- 515
BSNT_05812___ 505 GGGCCCGATGTCAGCAC----AGCATTATTACAGCAGCCCTTTGACTACA 550
|||...||.|.|| .|| ||| |.||.|.|||....||||||||.|
BL03952___ywd 516 GGGAGTGAAGACA-AACCAAGAGC--TCTTGCGGCAAAAATTTGACTATA 562
BSNT_05812___ 551 TTTTCTTTACAGGCAGTGTAGCTGTAGGAAAAATCGTCATGGAGGCCGCC 600
|.||.|||||.||||||||..|.|||||.|||.|.||||||||.|||||.
BL03952___ywd 563 TCTTTTTTACGGGCAGTGTTCCCGTAGGCAAAGTTGTCATGGAAGCCGCG 612
BSNT_05812___ 601 GCCAAACAATTAATTCCCGTAACCTTGGAGCTCGGCGGCAAAAGCCCCTG 650
||.|||||..|.|||||.||.|||.|.|||||.|||||.|||||||||||
BL03952___ywd 613 GCAAAACAGCTTATTCCAGTCACCCTCGAGCTTGGCGGAAAAAGCCCCTG 662
BSNT_05812___ 651 CATCGTCCATAAAGATGCTGACATTCAGCTTGCCGC-CAAACGCATCGTC 699
||||||.||.||.||||||||..|..|||||||.|| |||| |.||.||.
BL03952___ywd 663 CATCGTGCACAAGGATGCTGATCTCAAGCTTGCGGCTCAAA-GGATTGTT 711
BSNT_05812___ 700 TTCGGGAAATTTACAAATGCGGGACAAACCTGCATCGCACCGGATTATTT 749
|||||.||..|.|||||.||.|||||.||.|||||.||.||.||.|||.|
BL03952___ywd 712 TTCGGAAAGCTGACAAACGCAGGACAGACTTGCATTGCGCCTGACTATCT 761
BSNT_05812___ 750 ATTTGTCCACGAGGACATCAAAACGAAGCTG--------GCAGAAGAAAT 791
..|.||.|||.|.||..|.||||...||||| .|.|||..|||
BL03952___ywd 762 GCTCGTACACAAAGATGTAAAAAATGAGCTGATGCGCGCTCTGAAACAAT 811
BSNT_05812___ 792 GAAGCGTGCGATCAGAGAATTTTACGGCCCTCAGCCGGAACGGAATCCA- 840
|||||..|..|||||||||.....||||||| ||.|||
BL03952___ywd 812 --------CGATCCAAACATTTTACGGAGAAAAGCCGGA----AAGCCAT 849
BSNT_05812___ 841 CAG---TACGGCAAAATCGTCAGTGAGCGCCACTATC-AGCGGCTGCTCA 886
|.| |||||.||||||.|.|||.|.||.|| |.|| |.|||.|..||.
BL03952___ywd 850 CTGGCTTACGGAAAAATCATAAGTAAACGTCA-TTTCGAACGGTTAATCC 898
BSNT_05812___ 887 GCTTTCT---------GAATGATGGCATCCCGCTCACAGGCGGACAATCT 927
|||||.| |||| ||| .|||||||||||..||
BL03952___ywd 899 GCTTTTTACAAAACGAGAAT------ATC---GTCACAGGCGGAACAT-- 937
BSNT_05812___ 928 GATCCTGATCA---------CCACAAAATTGCGCCGACCATTCTCGAACA 968
|||| .|.|||||||||.|||.|||||.||||
BL03952___ywd 938 -------ATCAAAAAGACGCACTCAAAATTGCTCCGTCCATTATCGA--- 977
BSNT_05812___ 969 AGTGAGAGATGAC------TCTCCAGTGATGCAGGAGGAAATTTTCGGGC 1012
||| |..|||| ||.||.||.||||||||.||.||||||||.|
BL03952___ywd 978 --TGA-ACCTGACTGGGAATCGCCGGTCATGCAGGAAGAGATTTTCGGAC 1024
BSNT_05812___ 1013 CGATTCTTCCGCTCTTTACATACCGCGAT------ATCGGGGAAGTCATT 1056
||||.|||||..||.| |.||.|| ||||..||.||.||.
BL03952___ywd 1025 CGATCCTTCCCGTCAT------CGGCTATGAAACGATCGAAGACGTTATC 1068
BSNT_05812___ 1057 GAAAAAGTCCAATCGCGCCCTAAGCCGCTCGCCCTGTATCTCTTCACCA- 1105
.|||..||.|||...||||||||.||||||||.||.|||.|.||.||.|
BL03952___ywd 1069 CAAATGGTTCAAAGCCGCCCTAAACCGCTCGCGCTCTATTTGTTTACGAA 1118
BSNT_05812___ 1106 -CAAACAAAGAAACTGAGCGCGCTGTTTTAGGAAATC----------TGT 1144
.|||.||.|..||.||| |.|.||| |.|
BL03952___ywd 1119 TGAAAAAACGGTACAGAG------------GCACATCCTCAGCCGGATTT 1156
BSNT_05812___ 1145 CGTTTGGCGGGGGCTGTGTCAATGATACGTTAATGCATGTTGCGACGCCG 1194
|.||||||||.||.|||.|||||||.|||.|.|||||....||.||.||.
BL03952___ywd 1157 CATTTGGCGGAGGATGTATCAATGACACGCTGATGCACACAGCCACACCT 1206
BSNT_05812___ 1195 TATTTGCCATTCGGCGGCGTCGGGGAAAGCGGCATCGGCAGCTATCACGG 1244
||..|.||.|||||||||||.||.||||||||.|||||.||.||.||.||
BL03952___ywd 1207 TACCTCCCCTTCGGCGGCGTAGGCGAAAGCGGAATCGGAAGTTACCATGG 1256
BSNT_05812___ 1245 GTTTGACAGTTTTAACACATTCACGCACAAAAAAAGCGTCGTCAAACAAA 1294
||.|.||||.|||||.||.||..|.||..||||||||||..|.|||||.|
BL03952___ywd 1257 GTATCACAGCTTTAAGACGTTTTCCCATGAAAAAAGCGTTTTAAAACAGA 1306
BSNT_05812___ 1295 CGAACC-GTTTCGACTTCGCATTTCGTTATCCTTCCTCCAAAAACGGGCT 1343
|.|||| |||| |||.|..||||.|||||||||||.||.|||||||||||
BL03952___ywd 1307 CAAACCTGTTT-GACATTTCATTCCGTTATCCTTCATCGAAAAACGGGCT 1355
BSNT_05812___ 1344 GCGAATGATTCGAAAAA-TACTCAAATAA 1371
|||.||.| ||.||||| |.||||..||.
BL03952___ywd 1356 GCGGATCA-TCAAAAAACTTCTCAGGTAG 1383
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