Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05812 and BL03952

See Amino acid alignment / Visit BSNT_05812 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:53
# Commandline: needle
#    -asequence dna-align/BSNT_05812___ywdH.1.5803.seq
#    -bsequence dna-align/BL03952___ywdH.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05812___ywdH-BL03952___ywdH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05812___ywdH-BL03952___ywdH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05812___ywdH
# 2: BL03952___ywdH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1479
# Identity:     947/1479 (64.0%)
# Similarity:   947/1479 (64.0%)
# Gaps:         204/1479 (13.8%)
# Score: 2802.5
# 
#
#=======================================

BSNT_05812___      1 --------ATGAACAGCATCCCCTCTAT---------CATCAGCAAGCAT     33
                             |.|||||     .||||.||         |.|.|.|.|||| 
BL03952___ywd      1 ATGGCAGAACGAACA-----ACCTCCATCGAAACGACCGTTACCGAGCA-     44

BSNT_05812___     34 AAAGC-CTATTTT----GCGGCGGGACATACGAGACCGCTTG--AATCG-     75
                     ||||| .||||||    |||  |||..|.||.||  |..|||  ||||| 
BL03952___ywd     45 AAAGCAATATTTTTTAAGCG--GGGCAACACTAG--CTGTTGAAAATCGT     90

BSNT_05812___     76 -------AGACTGAACATTTTGCGAAA----GCTGAAACAAGCCGTCAGA    114
                            || ||.||||||   |.|||    ||||.||.||      |||
BL03952___ywd     91 CTGGAACAG-CTCAACATT---CTAAAAGATGCTGTAAAAA------AGA    130

BSNT_05812___    115 ACTCATGAAGCCGATCTCATA---GCCGCTCTCTACCAGGATCTCCACAA    161
                         ||||| |.||  .||||   |..||.||..|..|.|||||..|.||
BL03952___ywd    131 ----ATGAA-CGGA--ACATACTTGAGGCCCTTCAGAAAGATCTTAATAA    173

BSNT_05812___    162 ATCCGAGCAAGAAGCATACTCAACAGAAATCGGAATCGTCTTGGAGGAAA    211
                     |||.|||||.|||||.||....||.|||||.||.||.||..||||.||||
BL03952___ywd    174 ATCAGAGCACGAAGCCTATATGACGGAAATAGGCATTGTACTGGAAGAAA    223

BSNT_05812___    212 TCAGCTTTGTCATGAAACGGCTGAGAAAATGGTCCAAGCCGAAACGAGTC    261
                     ||.||||..|||..|.|||..|.|.|||||||.||||.||||||...|.|
BL03952___ywd    224 TCCGCTTCATCAGCAGACGATTAAAAAAATGGGCCAAACCGAAAAAGGCC    273

BSNT_05812___    262 AAAAC-GCCGCT--GACTCATCTAGGCTCCAAAAGCATCATCATTCCTGA    308
                     ||||| ||||.|  | |.||||  ||.||.|||||||||.||||||||||
BL03952___ywd    274 AAAACGGCCGTTTCG-CACATC--GGTTCAAAAAGCATCGTCATTCCTGA    320

BSNT_05812___    309 GCCGTATGGAACCGTTTTGGTGATTGCACCTTGGAACTATCCCTTGCAGC    358
                     |||.||.||.||.|||.||.|.||.||.||.|||||||||||.||.||||
BL03952___ywd    321 GCCTTACGGCACGGTTCTGATCATCGCGCCATGGAACTATCCGTTTCAGC    370

BSNT_05812___    359 TGGCGCTTTCTCCGTTGATTGGAGCCATTGCGGCGGGGAACACGGTCGTT    408
                     |.||..|.||.||..||||.||.||..||||.||||||||.||.|.|||.
BL03952___ywd    371 TTGCCGTCTCGCCCCTGATCGGCGCACTTGCTGCGGGGAATACCGCCGTC    420

BSNT_05812___    409 CTCAAGCCATCAGAATATACGCCGGCTGTTTCTGCTATTCTTTCCAAACT    458
                     .||||.||.||.||...|.|.||.||.||.||..|..||.|.|||.|..|
BL03952___ywd    421 ATCAAACCGTCTGAGCTTGCTCCCGCCGTATCAACCGTTATATCCGAGAT    470

BSNT_05812___    459 CATCAGCAG-CGTTTTTCCTACTGATTATGT---CGCTATGGCAGAAGGC    504
                     .|||| .|| ..|.|||||..|.||.|||||   ||.|||   .||||| 
BL03952___ywd    471 GATCA-AAGATATCTTTCCGCCCGAATATGTGTCCGTTAT---TGAAGG-    515

BSNT_05812___    505 GGGCCCGATGTCAGCAC----AGCATTATTACAGCAGCCCTTTGACTACA    550
                     |||...||.|.|| .||    |||  |.||.|.|||....||||||||.|
BL03952___ywd    516 GGGAGTGAAGACA-AACCAAGAGC--TCTTGCGGCAAAAATTTGACTATA    562

BSNT_05812___    551 TTTTCTTTACAGGCAGTGTAGCTGTAGGAAAAATCGTCATGGAGGCCGCC    600
                     |.||.|||||.||||||||..|.|||||.|||.|.||||||||.|||||.
BL03952___ywd    563 TCTTTTTTACGGGCAGTGTTCCCGTAGGCAAAGTTGTCATGGAAGCCGCG    612

BSNT_05812___    601 GCCAAACAATTAATTCCCGTAACCTTGGAGCTCGGCGGCAAAAGCCCCTG    650
                     ||.|||||..|.|||||.||.|||.|.|||||.|||||.|||||||||||
BL03952___ywd    613 GCAAAACAGCTTATTCCAGTCACCCTCGAGCTTGGCGGAAAAAGCCCCTG    662

BSNT_05812___    651 CATCGTCCATAAAGATGCTGACATTCAGCTTGCCGC-CAAACGCATCGTC    699
                     ||||||.||.||.||||||||..|..|||||||.|| |||| |.||.||.
BL03952___ywd    663 CATCGTGCACAAGGATGCTGATCTCAAGCTTGCGGCTCAAA-GGATTGTT    711

BSNT_05812___    700 TTCGGGAAATTTACAAATGCGGGACAAACCTGCATCGCACCGGATTATTT    749
                     |||||.||..|.|||||.||.|||||.||.|||||.||.||.||.|||.|
BL03952___ywd    712 TTCGGAAAGCTGACAAACGCAGGACAGACTTGCATTGCGCCTGACTATCT    761

BSNT_05812___    750 ATTTGTCCACGAGGACATCAAAACGAAGCTG--------GCAGAAGAAAT    791
                     ..|.||.|||.|.||..|.||||...|||||        .|.|||..|||
BL03952___ywd    762 GCTCGTACACAAAGATGTAAAAAATGAGCTGATGCGCGCTCTGAAACAAT    811

BSNT_05812___    792 GAAGCGTGCGATCAGAGAATTTTACGGCCCTCAGCCGGAACGGAATCCA-    840
                             |||||..|..|||||||||.....|||||||    ||.||| 
BL03952___ywd    812 --------CGATCCAAACATTTTACGGAGAAAAGCCGGA----AAGCCAT    849

BSNT_05812___    841 CAG---TACGGCAAAATCGTCAGTGAGCGCCACTATC-AGCGGCTGCTCA    886
                     |.|   |||||.||||||.|.|||.|.||.|| |.|| |.|||.|..||.
BL03952___ywd    850 CTGGCTTACGGAAAAATCATAAGTAAACGTCA-TTTCGAACGGTTAATCC    898

BSNT_05812___    887 GCTTTCT---------GAATGATGGCATCCCGCTCACAGGCGGACAATCT    927
                     |||||.|         ||||      |||   .|||||||||||..||  
BL03952___ywd    899 GCTTTTTACAAAACGAGAAT------ATC---GTCACAGGCGGAACAT--    937

BSNT_05812___    928 GATCCTGATCA---------CCACAAAATTGCGCCGACCATTCTCGAACA    968
                            ||||         .|.|||||||||.|||.|||||.||||   
BL03952___ywd    938 -------ATCAAAAAGACGCACTCAAAATTGCTCCGTCCATTATCGA---    977

BSNT_05812___    969 AGTGAGAGATGAC------TCTCCAGTGATGCAGGAGGAAATTTTCGGGC   1012
                       ||| |..||||      ||.||.||.||||||||.||.||||||||.|
BL03952___ywd    978 --TGA-ACCTGACTGGGAATCGCCGGTCATGCAGGAAGAGATTTTCGGAC   1024

BSNT_05812___   1013 CGATTCTTCCGCTCTTTACATACCGCGAT------ATCGGGGAAGTCATT   1056
                     ||||.|||||..||.|      |.||.||      ||||..||.||.||.
BL03952___ywd   1025 CGATCCTTCCCGTCAT------CGGCTATGAAACGATCGAAGACGTTATC   1068

BSNT_05812___   1057 GAAAAAGTCCAATCGCGCCCTAAGCCGCTCGCCCTGTATCTCTTCACCA-   1105
                     .|||..||.|||...||||||||.||||||||.||.|||.|.||.||.| 
BL03952___ywd   1069 CAAATGGTTCAAAGCCGCCCTAAACCGCTCGCGCTCTATTTGTTTACGAA   1118

BSNT_05812___   1106 -CAAACAAAGAAACTGAGCGCGCTGTTTTAGGAAATC----------TGT   1144
                      .|||.||.|..||.|||            |.|.|||          |.|
BL03952___ywd   1119 TGAAAAAACGGTACAGAG------------GCACATCCTCAGCCGGATTT   1156

BSNT_05812___   1145 CGTTTGGCGGGGGCTGTGTCAATGATACGTTAATGCATGTTGCGACGCCG   1194
                     |.||||||||.||.|||.|||||||.|||.|.|||||....||.||.||.
BL03952___ywd   1157 CATTTGGCGGAGGATGTATCAATGACACGCTGATGCACACAGCCACACCT   1206

BSNT_05812___   1195 TATTTGCCATTCGGCGGCGTCGGGGAAAGCGGCATCGGCAGCTATCACGG   1244
                     ||..|.||.|||||||||||.||.||||||||.|||||.||.||.||.||
BL03952___ywd   1207 TACCTCCCCTTCGGCGGCGTAGGCGAAAGCGGAATCGGAAGTTACCATGG   1256

BSNT_05812___   1245 GTTTGACAGTTTTAACACATTCACGCACAAAAAAAGCGTCGTCAAACAAA   1294
                     ||.|.||||.|||||.||.||..|.||..||||||||||..|.|||||.|
BL03952___ywd   1257 GTATCACAGCTTTAAGACGTTTTCCCATGAAAAAAGCGTTTTAAAACAGA   1306

BSNT_05812___   1295 CGAACC-GTTTCGACTTCGCATTTCGTTATCCTTCCTCCAAAAACGGGCT   1343
                     |.|||| |||| |||.|..||||.|||||||||||.||.|||||||||||
BL03952___ywd   1307 CAAACCTGTTT-GACATTTCATTCCGTTATCCTTCATCGAAAAACGGGCT   1355

BSNT_05812___   1344 GCGAATGATTCGAAAAA-TACTCAAATAA   1371
                     |||.||.| ||.||||| |.||||..||.
BL03952___ywd   1356 GCGGATCA-TCAAAAAACTTCTCAGGTAG   1383


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