Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05825 and BL03950
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:54
# Commandline: needle
# -asequence dna-align/BSNT_05825___vpr.1.5803.seq
# -bsequence dna-align/BL03950___vpr.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05825___vpr-BL03950___vpr.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05825___vpr-BL03950___vpr.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05825___vpr
# 2: BL03950___vpr
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2555
# Identity: 1740/2555 (68.1%)
# Similarity: 1740/2555 (68.1%)
# Gaps: 280/2555 (11.0%)
# Score: 5622.0
#
#
#=======================================
BSNT_05825___ 1 TTGAAAAAGGGGATCATTCGCT-TTCTGCTTGTAAGTTTTGTCTTATTTT 49
||||.|||..|.|||.|.|||| ||.|| ||.|...||||.|..||||.|
BL03950___vpr 1 TTGAGAAAAAGTATCGTGCGCTATTTTG-TTATGGCTTTTATTCTATTAT 49
BSNT_05825___ 50 TTGCGTTATCCACAGGTATT----ACGGGCGTCCAGGCAGC-TCCGGCTT 94
||||||||||||| ||| ||.||.||.||||||.| ||||
BL03950___vpr 50 TTGCGTTATCCAC----ATTCCTCACCGGAGTGCAGGCAACTTCCG---- 91
BSNT_05825___ 95 CTTC-----AAAAACGTCGGCTGATCTGGAAAAAGCCGAGGTATTCGGTG 139
||| ||||| ||||.||||.||.||.|||||.||..|.|.|||||
BL03950___vpr 92 -TTCCCGATAAAAA-GTCGCCTGAGCTTGAGAAAGCTGAAATCTACGGTG 139
BSNT_05825___ 140 ATATCGACATGACGACAAGCAAAAAAACAACCGTTATAGTGGAATTAAAA 189
||||.||..|||||.|....|||.|.||.||.|||||.||||||.|.|||
BL03950___vpr 140 ATATTGATGTGACGTCTGATAAACAGACGACGGTTATCGTGGAACTGAAA 189
BSNT_05825___ 190 GAAAAATC-CTTGGCAGAAGCGAAGGAAGCG---GGAGAAAGCCAATCGA 235
|||||.|| ||| ||.|||||.| ||||| |||||||..|||.||
BL03950___vpr 190 GAAAAGTCGCTT-GCCGAAGCAA---AAGCGGACGGAGAAAAACAAACG- 234
BSNT_05825___ 236 AAAGCAAG------CTGAAAACCGCTCGCACCAAAGC----AAAAAA--T 273
||| ||.|||||.|||||.|.|||||| ||||.| |
BL03950___vpr 235 -----AAGGCTTCTCTAAAAACAGCTCGAAGCAAAGCGCTGAAAACACTT 279
BSNT_05825___ 274 AAAGCAATCAAAGCGGTGAAAAACGGAAAAGTAAACCGGGAATATGAGCA 323
||| |||||| |||||||||||.|||||.||.|.
BL03950___vpr 280 AAA------AAAGCG------------AAAGTAAACCGCGAATACGACCG 311
BSNT_05825___ 324 GGTATTCTCAGGCTTCTCTATGAAGCTTCCAGCTAATGAGATTCCAAAAC 373
.|||||.||.|||||.||||||||.||.||.||.|.|||.||||||||.|
BL03950___vpr 312 TGTATTTTCGGGCTTTTCTATGAAACTGCCGGCCAGTGAAATTCCAAAGC 361
BSNT_05825___ 374 TTCTCGCGGTAAAAGACGTTAAGGCGGTGTACCCGAACGTCACATATAAA 423
|.|||||.||.||.||.|||||.|||||.||.||.||||..||.||.|||
BL03950___vpr 362 TGCTCGCCGTCAAGGAAGTTAAAGCGGTTTATCCAAACGCAACTTACAAA 411
BSNT_05825___ 424 ACAGACA--ATATGAAGGATAAAGACGTCACAATCTCCGAAGACGCCGTA 471
.|.|||| .|| .||||| ||||||||.|||.|..|.|.|||||||.|.
BL03950___vpr 412 CCTGACAGCGTA-AAAGGA-AAAGACGTGACACTTGCAGCAGACGCCATT 459
BSNT_05825___ 472 TCTCCGCAAATGGATGACAGTGCGCCTTATATCGGAGCAAACGATGCATG 521
|.|||.||.||||||.|.|||||.||.|..||||||||..|..|.|||||
BL03950___vpr 460 TATCCACAGATGGATAAAAGTGCCCCGTTCATCGGAGCGGATCAGGCATG 509
BSNT_05825___ 522 GGATTTAGGCTACACAGGAAAAGGCATTAAGGTGGCGATTATTGACACTG 571
|.|.|..|||||.||.||.||||||||||||||.||..|||||||.||.|
BL03950___vpr 510 GAAATCGGGCTATACCGGTAAAGGCATTAAGGTAGCCGTTATTGATACGG 559
BSNT_05825___ 572 GGGTTGAATACAATCACCCAGATCTGAAGAAAAACTTTGGACAATATAAA 621
|.||.||.||||..||.||.||..|.|||||.||.||.||.|.||||||.
BL03950___vpr 560 GCGTGGATTACACCCATCCCGACTTAAAGAATAATTTCGGCCCATATAAG 609
BSNT_05825___ 622 GGATACGATTTTGTGGACAATGATTACGATCCAAAAGAAACACCAACAGG 671
||.||.||.||||||||.||||||||.||||||.|.||||||||.|||||
BL03950___vpr 610 GGCTATGACTTTGTGGATAATGATTATGATCCACAGGAAACACCGACAGG 659
BSNT_05825___ 672 CGATCCGAGGGGCGGAGCGACTGACCACGGCACACACGTAGCCGGAACTG 721
|||.|||.|.||||||||||||||.||||||||.||.||.||.|||||..
BL03950___vpr 660 CGACCCGCGCGGCGGAGCGACTGATCACGGCACTCATGTTGCAGGAACAA 709
BSNT_05825___ 722 TGGCTGCAAACGGAACA-ATTAAAGGCGTAGCGCCTGATGCCACACTTCT 770
|.||.||.||||| ||| |||||||||||.||||||||.||.||.|||||
BL03950___vpr 710 TCGCCGCGAACGG-ACAGATTAAAGGCGTGGCGCCTGAAGCAACGCTTCT 758
BSNT_05825___ 771 TGCTTATCGTGTGTTAGGGCCTGGCGGAAGCGGCACATCGGAAAACGTCA 820
||||||.||.|||.|.||.||.|||||....||||||.|.||.||.||.|
BL03950___vpr 759 TGCTTACCGCGTGCTCGGCCCCGGCGGCTCAGGCACAACCGAGAATGTGA 808
BSNT_05825___ 821 TCGCCGGTGTGGAA-----CGTGCAGTGCAGGACGGGGCAGATGTGATGA 865
|.||.||..|.||| ||| |||| |||||.|||.|.|||||||
BL03950___vpr 809 TTGCGGGCATTGAAAAAGCCGT----TGCA-GACGGAGCAAAAGTGATGA 853
BSNT_05825___ 866 ACCTGTCTCTCGGAAACTCTTTAAACAACCCGGACTGGGCGACAAGCACA 915
||||.||..|.|||||.||..|.||||.|||.||.|..||.|||||||..
BL03950___vpr 854 ACCTCTCATTGGGAAATTCGCTGAACAGCCCTGATTATGCAACAAGCATC 903
BSNT_05825___ 916 GCGCTTGACTGGGCCATGTCAGAAGGCGTTGTCGCTGTTACCTCAAACGG 965
||.||.||||||||.|||.|.|||||.||||||||.|||||.||||||||
BL03950___vpr 904 GCACTGGACTGGGCGATGGCTGAAGGGGTTGTCGCCGTTACGTCAAACGG 953
BSNT_05825___ 966 CAACAGCGGACCGAACGGCTGGACAGTCGGATCGCCGGGCACATCCAGAG 1015
.||||||||||||.|...||||||.|||||.||||||||.|||||.||.|
BL03950___vpr 954 TAACAGCGGACCGGAAAACTGGACGGTCGGCTCGCCGGGAACATCAAGGG 1003
BSNT_05825___ 1016 AAGCGATTTCTGTCGGTGCGACTCAGCTGCCGCTCAATGA--ATACGCCG 1063
..||||||||.|||||.||..|.|||||.|||...||||| ||.||..|
BL03950___vpr 1004 TTGCGATTTCCGTCGGCGCATCACAGCTTCCGTATAATGAGTATTCGGTG 1053
BSNT_05825___ 1064 TCACTTTCGGCTCCTATTCTTCAGCAAAAGTGATGGGCTATAACAAAGAG 1113
.|.|||.| .||.|||||.||||||||.||||||||.| ||.|||||
BL03950___vpr 1054 ACGCTTCC--TTCGTATTCATCAGCAAAGGTGATGGGAT---ACCAAGAG 1098
BSNT_05825___ 1114 GACGACGTCAAAG-----------------CGCTCAATAACAAAGAAGTT 1146
|| |||| ||.|| ||||.||.
BL03950___vpr 1099 GA-------AAAGGATCTTGAAGCATTGAACGGTC-------AAGAGGTG 1134
BSNT_05825___ 1147 GAGCTTGTCGAAGCGGGAATCGGCGAAGCAAAGGATTTTGAAGGGAAAGA 1196
||.||.||.|||||.||..||||..||||..|.|||||...|||.|||||
BL03950___vpr 1135 GAACTCGTTGAAGCCGGCCTCGGACAAGCTGACGATTTCTCAGGCAAAGA 1184
BSNT_05825___ 1197 CCTGACAGGCAAAGTCGCCGTTGTCAAACGAGGCAGCATTGCATTTGTGG 1246
..|||.|||.|||||.||.|||.||.|..|||||..|||..|||||||.|
BL03950___vpr 1185 TGTGAAAGGAAAAGTTGCGGTTATCCAGAGAGGCGTCATACCATTTGTTG 1234
BSNT_05825___ 1247 ATAAAGCGGATAACGCTAAAAAAGCCGGTGCCATCGG---CATGGTTGTG 1293
||||.||.||.||.||.|||||.|||||.||.||||| |.||.||
BL03950___vpr 1235 ATAAGGCTGAAAATGCCAAAAACGCCGGCGCTATCGGAGCCGTGATT--- 1281
BSNT_05825___ 1294 TATAACAATCTCTCTGGAGAAATTGAAGCCAATGTGCCA--GGCATGTCT 1341
||.||.|||....|.||.|||||.||.||.||.|| || ||.|||.|.
BL03950___vpr 1282 TACAATAATGCAACAGGGGAAATCGAGGCAAACGT--CATGGGGATGGCC 1329
BSNT_05825___ 1342 GTCCCAACGATTAAGCTTTCATTAGAAGACGGCGAAAAACTCGT----CA 1387
||.||.||..|.||..|.|||..||||||.||||||||.||.|| ||
BL03950___vpr 1330 GTACCGACCGTCAAATTGTCAAAAGAAGAGGGCGAAAAGCTTGTTCAACA 1379
BSNT_05825___ 1388 GCGCCCTGAAAGCTGGTGAGACAAAAACA-------------ACATTCAA 1424
| .|.||||..|| .||||| .|.|||||
BL03950___vpr 1380 G----ATCAAAGAAGG-------GAAACACTCCGTTGTCTTTTCTTTCAA 1418
BSNT_05825___ 1425 GTT-GACGGTCTCAAAAGCGCTCGGTG-AACAAGTCGCTGATTTCTCATC 1472
.|| ||| |||..|||.||.| |||||.|..||.| |||||.||
BL03950___vpr 1419 ATTGGAC-------AAAAAGCTGGGGGAAACAATTGCCTCA-TTCTCGTC 1460
BSNT_05825___ 1473 ACGCGGTCCTGTTATGGATACGTGGATGATTAAGCCTGATATTTCCGCGC 1522
.|||||.|||||.||||||||.|||||||||||.|||||..||||.||||
BL03950___vpr 1461 CCGCGGGCCTGTCATGGATACATGGATGATTAAACCTGACGTTTCAGCGC 1510
BSNT_05825___ 1523 CAGGGGTCAATATCGTGAGCACGATCCCAACACACGATCCTGACCATCCA 1572
||||.|||||.|||||.|||||.||.||.||.||||||||..|..|.||.
BL03950___vpr 1511 CAGGCGTCAACATCGTCAGCACCATTCCGACCCACGATCCGAAAAACCCG 1560
BSNT_05825___ 1573 TACGGCTACGGATCAAAACAAGGAACAAGCATGGCATCGCCTCATATTGC 1622
|||||.|||||.||||||||.||||||||||||||.||.||.|||.|.||
BL03950___vpr 1561 TACGGTTACGGTTCAAAACAGGGAACAAGCATGGCTTCCCCGCATGTCGC 1610
BSNT_05825___ 1623 CGGAGCGGTTGCCGTTATTAAA-CAAGCCAAACCAAAGTGGAGCG-TTGA 1670
.|||.|||..||| .||||||| ||.||||||||..|.|||| || .|||
BL03950___vpr 1611 GGGAACGGCAGCC-ATATTAAAGCAGGCCAAACCGGATTGGA-CGCCTGA 1658
BSNT_05825___ 1671 ACAGATTAAAACCGCCATCATGAATACCGCTGTCACTTTAAA-------G 1713
.||.||.|||..||...|.||||||||.||.| ||| |
BL03950___vpr 1659 GCAAATCAAAGGCGTACTGATGAATACGGCGG-------AAAAACTGACG 1701
BSNT_05825___ 1714 GATAGCGATGGGGAAGTATAT-CCGCATAACGCTCAAGGCGCAGGCAG-- 1760
||| |..|..||.|||..|.| ||.||.||..|.|||||.||.|||||
BL03950___vpr 1702 GAT-GAAAATGGAAAGCCTCTCCCTCACAATACGCAAGGAGCGGGCAGCA 1750
BSNT_05825___ 1761 --CGCAAGAATCATGAACGCAATCAAAGC-----CGATTCGCTCGTCTCA 1803
||| ||||||.|.||..|.||||| |.||| ||..|.
BL03950___vpr 1751 TCCGC----ATCATGGAGGCCCTTAAAGCTTCATCCATT-----GTAACG 1791
BSNT_05825___ 1804 CCTGGAAGCTATTCATACGGCACGTTCTTGAAGGA-AAACGGAAACGAAA 1852
||.||.|||.||||||||||.||.|||.||||.|| |||.|||||| |.|
BL03950___vpr 1792 CCGGGCAGCCATTCATACGGAACATTCCTGAAAGACAAAGGGAAAC-AGA 1840
BSNT_05825___ 1853 CAAAAAATGAAACGTTTACGATTGAAAATCAATCTTC-CATTAG-AAAGT 1900
|.|||||..||.||||.|||||||||||.|..||||| || .|| ||||.
BL03950___vpr 1841 CGAAAAAACAAGCGTTCACGATTGAAAACCTTTCTTCACA-CAGAAAAGC 1889
BSNT_05825___ 1901 CTTACACACTTGAATACTCATTTAATGGCAGCGGCATTTCCAC---ATCC 1947
||..|| .||.||||||||.|||||.||.|..||||| ||| |||.
BL03950___vpr 1890 CTATCA-GCTCGAATACTCCTTTAAAGGAACGGGCAT---CACGGTATCA 1935
BSNT_05825___ 1948 GGCAC--AAGCCGTGTTGTGATTCCGGCACATCAAACCGGGAAAGCCACT 1995
||.|| || ||.||.|||.|.|||||..|||||||.||.|||||..|.
BL03950___vpr 1936 GGAACGGAA--CGAGTCGTGGTACCGGCCAATCAAACAGGTAAAGCAGCG 1983
BSNT_05825___ 1996 GCAAAAGTAAAGGTCAATACGAAGAAAACAAAAGCTGGCACCTATGAAGG 2045
||||||||||..||||||.|...||||||.|||||.|||||.||||||||
BL03950___vpr 1984 GCAAAAGTAACCGTCAATTCCGCGAAAACGAAAGCAGGCACATATGAAGG 2033
BSNT_05825___ 2046 AACGGTTATCGTCAGAGAAGGCGGAAAAACGGTCGCTAAGGTACCTACAT 2095
.||||||..|.||.|.||||.|||||.||..|||||..|..|.||
BL03950___vpr 2034 CACGGTTTACATCCGTGAAGACGGAAGAAAAGTCGCCGAAATCCC----- 2078
BSNT_05825___ 2096 TGC------TGATTGTGAAAGAGCCCGATTATCCGAGAGTCACATCTGTC 2139
|| ||||.||.||||||||.||.||.|||.|.||||||||.||.
BL03950___vpr 2079 -GCTCCTATTGATCGTCAAAGAGCCAGACTACCCGCGCGTCACATCCGTA 2127
BSNT_05825___ 2140 TCTGT--------CAGCGAAGGGTCTGTACAAGG----TAC-CTATCAAA 2176
.|.|| .|||.||| ||.|| ||| |.|||
BL03950___vpr 2128 ACAGTTGAACCGGGAGCAAAG--------CAGGGCGCTTACACGATC--- 2166
BSNT_05825___ 2177 TTGAAACCTACCTTCC-TGCGGGAGCGGAAGAGCTGGCGTTCCTCGTCTA 2225
|||.|||||||.|| .||||| ||.||||||||.||.||.||||||||
BL03950___vpr 2167 --GAAGCCTACCTGCCGGGCGGG-GCTGAAGAGCTCGCATTTCTCGTCTA 2213
BSNT_05825___ 2226 TGACAGCAACCTTGA--TTTCGCAGGCCAAGCCGGCATTTATAAAAACCA 2273
||| .|.||.|.||| .|||.| |||||.||||||.||||.||||||||
BL03950___vpr 2214 TGA-TGAAAACCTGAACCTTCTC-GGCCAGGCCGGCGTTTACAAAAACCA 2261
BSNT_05825___ 2274 AGATAAAGGTTACCAGTACTT-TGACTGGGACGGCACGATTAATGGCGGA 2322
.|..|||||.||.||.| ||| |.|.|||.||||||..||.||||.||
BL03950___vpr 2262 GGGCAAAGGCTATCAAT-CTTATCAATGGAACGGCAAAATCAATGACG-- 2308
BSNT_05825___ 2323 ACCAAA---CTTCCGGCCGGAGAGTATTACTTGCTCGCATATG---CCGC 2366
||..| |||..|.|||||.|.||.||..||||.||.|||| ||||
BL03950___vpr 2309 -CCGCATCCCTTAAGTCCGGAAAATACTATATGCTTGCCTATGCATCCGC 2357
BSNT_05825___ 2367 GAACAAAGGCAAGTCAAGCCAGGTTTTGACCGAAGAACCTTTCACTGTGG 2416
||||||.||.||||||.|.||.|||||.|||||.|||||.|..||.|
BL03950___vpr 2358 ---CAAAGGGAAATCAAGCTACGTATTGACGGAAGACCCTTTTATCGTCG 2404
BSNT_05825___ 2417 AATAA 2421
|||||
BL03950___vpr 2405 AATAA 2409
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