Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05847 and BL03944

See Amino acid alignment / Visit BSNT_05847 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:55
# Commandline: needle
#    -asequence dna-align/BSNT_05847___ywcB.1.5803.seq
#    -bsequence dna-align/BL03944___ywcB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05847___ywcB-BL03944___ywcB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05847___ywcB-BL03944___ywcB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05847___ywcB
# 2: BL03944___ywcB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 328
# Identity:     225/328 (68.6%)
# Similarity:   225/328 (68.6%)
# Gaps:          32/328 ( 9.8%)
# Score: 692.0
# 
#
#=======================================

BSNT_05847___      1 AT-GTACAAAGCTGATTATAAACAGATTGCTGCAA-----CGCCGTCT--     42
                     || |.|.||.||      .|||.|||||.|.||||     ||.|.|||  
BL03944___ywc      1 ATGGGAGAAGGC------AAAATAGATTACAGCAAAGCTGCGGCATCTCC     44

BSNT_05847___     43 ---TTTCAAGC-TTTTTTAAAGCAGAAACGCGCTTTTATTGTTCCTTCTG     88
                        .|||.||| .||.|||||||.||||||.|||||||||||.|| ..||
BL03944___ywc     45 GGAGTTCCAGCGGTTGTTAAAGCGGAAACGGGCTTTTATTGTACC-GATG     93

BSNT_05847___     89 -CGATTTTCTTTTTTGTCTTTTATTTTTCACTTCCTGTTTTGACATCTTA    137
                      |||||||||||||..||||||||||....||.||.|||.|||||||.||
BL03944___ywc     94 ACGATTTTCTTTTTGCTCTTTTATTTCCTGCTGCCGGTTATGACATCATA    143

BSNT_05847___    138 TTTCACCTTTTTGAATGCA-CCGGCCATTGGAGCTGTTTCATGGGCTTGG    186
                     .|||||.||||||||| || |||||..|.||.||..|..|.|||||.|||
BL03944___ywc    144 CTTCACATTTTTGAAT-CAGCCGGCAGTCGGGGCCATCACGTGGGCATGG    192

BSNT_05847___    187 CTGTTCGCCATCGCCCAATTCGCTATGACCTGGATACTGAGTACTGTGTA    236
                     .|.|||||.||.||.||.||.|.||||||.||||..|||.|.|.||||||
BL03944___ywc    193 GTTTTCGCGATTGCTCAGTTTGTTATGACGTGGACGCTGTGCATTGTGTA    242

BSNT_05847___    237 TTCCCGGAGAGCCGCTCATTTCGATCGGTATGTAAGCGCTTT--AAAAGA    284
                     |.|....|.|||||.|||.|||||||....||.|||||.|||  ||||||
BL03944___ywc    243 TACGAAAAAAGCCGGTCAATTCGATCAAATTGCAAGCGATTTCAAAAAGA    292

BSNT_05847___    285 GGATCTGAAGG-GTGAACAGAT--ATGA    309
                     .||| ||.||| ||    .|||  ||||
BL03944___ywc    293 AGAT-TGGAGGCGT----TGATTCATGA    315


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