Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05859 and BL03941

See Amino acid alignment / Visit BSNT_05859 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:56
# Commandline: needle
#    -asequence dna-align/BSNT_05859___ywbH.1.5803.seq
#    -bsequence dna-align/BL03941___ywbH.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05859___ywbH-BL03941___ywbH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05859___ywbH-BL03941___ywbH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05859___ywbH
# 2: BL03941___ywbH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 405
# Identity:     288/405 (71.1%)
# Similarity:   288/405 (71.1%)
# Gaps:          36/405 ( 8.9%)
# Score: 946.0
# 
#
#=======================================

BSNT_05859___      1 ATGAAAAAACTGTTGCTAACCG-TTA-TTCAAATCGCTCTGTTATTTATA     48
                     |||||||.|.|..|  |||..| ||| .|||..|||||||.||.|||.||
BL03941___ywb      1 ATGAAAACATTCAT--TAAAGGATTAGGTCAGGTCGCTCTTTTGTTTTTA     48

BSNT_05859___     49 TTTGCTCGGCTGATTAAT-TGGGTGAC-AGCCCTTCTTCATATAAATATT     96
                     ||.||.||..|.||.||| ||..||.| ||  .|||||||||||||.|||
BL03941___ywb     49 TTCGCCCGTTTCATGAATCTGATTGTCGAG--GTTCTTCATATAAACATT     96

BSNT_05859___     97 CCCGGCAGTATAATAGGGATT---GTGATTCTT----TTCACATTATTGC    139
                     ||||||||.||..|.||||||   ||.|||.||    |||       |.|
BL03941___ywb     97 CCCGGCAGCATTCTCGGGATTATCGTCATTTTTGCGCTTC-------TCC    139

BSNT_05859___    140 ACTTTAACATTATCAAGCTTGAATGGATCGAGCTTGGTGCAACGTGGCTT    189
                     |.||.||.||.||.|||||.||||||||.||..|.||.||...|||||||
BL03941___ywb    140 ATTTCAAAATCATTAAGCTGGAATGGATTGAAATCGGCGCGCTGTGGCTT    189

BSNT_05859___    190 CTCGGGGAGCTGCTTTTATTTTTTATCCCGTCTGCCGTCGGAGTGAT--T    237
                     ||||.||||||||||||.||.||..||||.||.||||||||   |||  |
BL03941___ywb    190 CTCGCGGAGCTGCTTTTGTTCTTCGTCCCTTCAGCCGTCGG---GATTAT    236

BSNT_05859___    238 GAA-TACGGAGACATTATGTCGAAATTTGGTGTCAGCATTCTGCTTGTTG    286
                     ||| ||||||||.|||.||.|..||||.||....||||||.|.||.||||
BL03941___ywb    237 GAACTACGGAGATATTCTGGCTGAATTCGGCACAAGCATTATACTCGTTG    286

BSNT_05859___    287 TCATCATCAGCACGTTTGTCGTGATGGTGTCTACAGGAACGCTTACACAA    336
                     ||.|||||||.||.||.|||||.||||||||.||.||||.|||.||.|||
BL03941___ywb    287 TCCTCATCAGTACATTCGTCGTCATGGTGTCGACCGGAATGCTGACTCAA    336

BSNT_05859___    337 CTCATTGCAAAGAGAAAGG--AGAAAAAGCATACGTGTTCATCGGAATTG    384
                     .|.|||||.||.|||||||  |||||||  |.||.||.||||||||  ||
BL03941___ywb    337 TTGATTGCCAAAAGAAAGGAAAGAAAAA--AAACATGCTCATCGGA--TG    382

BSNT_05859___    385 --TAA    387
                       |||
BL03941___ywb    383 CTTAA    387


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