Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05859 and BL03941
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:56
# Commandline: needle
# -asequence dna-align/BSNT_05859___ywbH.1.5803.seq
# -bsequence dna-align/BL03941___ywbH.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05859___ywbH-BL03941___ywbH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05859___ywbH-BL03941___ywbH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05859___ywbH
# 2: BL03941___ywbH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 405
# Identity: 288/405 (71.1%)
# Similarity: 288/405 (71.1%)
# Gaps: 36/405 ( 8.9%)
# Score: 946.0
#
#
#=======================================
BSNT_05859___ 1 ATGAAAAAACTGTTGCTAACCG-TTA-TTCAAATCGCTCTGTTATTTATA 48
|||||||.|.|..| |||..| ||| .|||..|||||||.||.|||.||
BL03941___ywb 1 ATGAAAACATTCAT--TAAAGGATTAGGTCAGGTCGCTCTTTTGTTTTTA 48
BSNT_05859___ 49 TTTGCTCGGCTGATTAAT-TGGGTGAC-AGCCCTTCTTCATATAAATATT 96
||.||.||..|.||.||| ||..||.| || .|||||||||||||.|||
BL03941___ywb 49 TTCGCCCGTTTCATGAATCTGATTGTCGAG--GTTCTTCATATAAACATT 96
BSNT_05859___ 97 CCCGGCAGTATAATAGGGATT---GTGATTCTT----TTCACATTATTGC 139
||||||||.||..|.|||||| ||.|||.|| ||| |.|
BL03941___ywb 97 CCCGGCAGCATTCTCGGGATTATCGTCATTTTTGCGCTTC-------TCC 139
BSNT_05859___ 140 ACTTTAACATTATCAAGCTTGAATGGATCGAGCTTGGTGCAACGTGGCTT 189
|.||.||.||.||.|||||.||||||||.||..|.||.||...|||||||
BL03941___ywb 140 ATTTCAAAATCATTAAGCTGGAATGGATTGAAATCGGCGCGCTGTGGCTT 189
BSNT_05859___ 190 CTCGGGGAGCTGCTTTTATTTTTTATCCCGTCTGCCGTCGGAGTGAT--T 237
||||.||||||||||||.||.||..||||.||.|||||||| ||| |
BL03941___ywb 190 CTCGCGGAGCTGCTTTTGTTCTTCGTCCCTTCAGCCGTCGG---GATTAT 236
BSNT_05859___ 238 GAA-TACGGAGACATTATGTCGAAATTTGGTGTCAGCATTCTGCTTGTTG 286
||| ||||||||.|||.||.|..||||.||....||||||.|.||.||||
BL03941___ywb 237 GAACTACGGAGATATTCTGGCTGAATTCGGCACAAGCATTATACTCGTTG 286
BSNT_05859___ 287 TCATCATCAGCACGTTTGTCGTGATGGTGTCTACAGGAACGCTTACACAA 336
||.|||||||.||.||.|||||.||||||||.||.||||.|||.||.|||
BL03941___ywb 287 TCCTCATCAGTACATTCGTCGTCATGGTGTCGACCGGAATGCTGACTCAA 336
BSNT_05859___ 337 CTCATTGCAAAGAGAAAGG--AGAAAAAGCATACGTGTTCATCGGAATTG 384
.|.|||||.||.||||||| ||||||| |.||.||.|||||||| ||
BL03941___ywb 337 TTGATTGCCAAAAGAAAGGAAAGAAAAA--AAACATGCTCATCGGA--TG 382
BSNT_05859___ 385 --TAA 387
|||
BL03941___ywb 383 CTTAA 387
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