Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00931 and BL03938
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:29
# Commandline: needle
# -asequence dna-align/BSNT_00931___ydfH.1.5803.seq
# -bsequence dna-align/BL03938___ydfH.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00931___ydfH-BL03938___ydfH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00931___ydfH-BL03938___ydfH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00931___ydfH
# 2: BL03938___ydfH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1235
# Identity: 1021/1235 (82.7%)
# Similarity: 1021/1235 (82.7%)
# Gaps: 82/1235 ( 6.6%)
# Score: 4518.5
#
#
#=======================================
BSNT_00931___ 0 -------------------------------------------------- 0
BL03938___ydf 1 TTGCTGATAAGGAATCCTTTCAAAGAAAAATACTACTCACATGATAGGCG 50
BSNT_00931___ 1 ----------ATGCTTGCACTCAGAGTGCCGGGCCTGGCTTTTATTCTTA 40
||||||||||||||||||||||||||||||||||||||.|
BL03938___ydf 51 GGCATTAAATATGCTTGCACTCAGAGTGCCGGGCCTGGCTTTTATTCTCA 100
BSNT_00931___ 41 TGATCTATATAGCCTCTATCGTGCTGCAATTTGTTTCTGGGGGCTGGTCC 90
||||||||.|.|||||||||||||||||||||.||..||||.||||||||
BL03938___ydf 101 TGATCTATGTCGCCTCTATCGTGCTGCAATTTCTTAATGGGAGCTGGTCC 150
BSNT_00931___ 91 ATTTTATTGCTTTATGCGTTTACCATATTAATCGCCATTTTTGCTTTGCT 140
||||||||||||.|||.||||||..||||.|.||||||.|||||||||.|
BL03938___ydf 151 ATTTTATTGCTTAATGTGTTTACGGTATTGACCGCCATCTTTGCTTTGTT 200
BSNT_00931___ 141 TCATTGGCACTCATATCGCTGGGTTAAGAAAAGAGTGATTCTGTATTTCG 190
.||||||||||||||||||||||||||||||||.|||||||||||.||||
BL03938___ydf 201 GCATTGGCACTCATATCGCTGGGTTAAGAAAAGGGTGATTCTGTACTTCG 250
BSNT_00931___ 191 TGGTACAAGGTTTGATCACCTTTGCACTTGCTAATCTCATGACTGGCTTC 240
|..||||||||||||||||.|||.|||||||||||.|||||.|.|||||
BL03938___ydf 251 TATTACAAGGTTTGATCACTTTTACACTTGCTAATGTCATGTCAGGCTT- 299
BSNT_00931___ 241 TTTA-TACTTGTCATTATCGGCCTTTATGCATTTTTAATTGGACAGATTT 289
|||| |.||..||||.||.|||||||||||||||||.||.|||||||||.
BL03938___ydf 300 TTTAGTGCTAATCATCATTGGCCTTTATGCATTTTTGATCGGACAGATTA 349
BSNT_00931___ 290 TAGGAATGGCAGACAGAAGAAGGACTTTTCTCATTCTTTATCTATTGCTG 339
|||||||||||||||||||||.|||.||.|||||.||||||.|||||||.
BL03938___ydf 350 TAGGAATGGCAGACAGAAGAAAGACGTTCCTCATCCTTTATTTATTGCTT 399
BSNT_00931___ 340 CTGCTGGTCA----------TAAATTCGGCGTATCACCTTCATAAAGGTG 379
||||| |||| || |||||..||||.|||||||
BL03938___ydf 400 CTGCT-GTCAATCACTGTACTA---------TATCATATTCACAAAGGTG 439
BSNT_00931___ 380 AAGTTTTGCATTTTATTGTTATTGCTGGGCCAATCATGATTGTCATCATC 429
||..||||||||||.||||.||.||.|..||.||.|||||.||.||.|||
BL03938___ydf 440 AATATTTGCATTTTCTTGTCATAGCAGTACCTATTATGATCGTGATTATC 489
BSNT_00931___ 430 ACTTATGCCGCAACATTTTTTGCCCAAGTCGATGAAAAAATAAAAGCTCA 479
||.||||||||.||||||||||||||||||||||||||.|.||||||.||
BL03938___ydf 490 ACATATGCCGCTACATTTTTTGCCCAAGTCGATGAAAAGACAAAAGCGCA 539
BSNT_00931___ 480 ATTGACTCTTGAAAGGCTGGAGCTGGCTCATCAGCAGGTAGAACAGCTGA 529
..||||||||||||||||||||||||||||||||||||||||||||||||
BL03938___ydf 540 GCTGACTCTTGAAAGGCTGGAGCTGGCTCATCAGCAGGTAGAACAGCTGA 589
BSNT_00931___ 530 CGCTGCAGAACGAAAGACAGCGGATGGCCCGAGATTTACACGATACGCTT 579
|||||||.|||||.||||||||.||||||||.||.||.||||||||||||
BL03938___ydf 590 CGCTGCAAAACGAGAGACAGCGTATGGCCCGGGACTTGCACGATACGCTT 639
BSNT_00931___ 580 GCTCAAGGTCTTGTCAGTTTAAATATGCAGCTGGATGCGATTCATGTTCA 629
|||||.||.||.|||||||||||||||||||||||.||.|||||||||||
BL03938___ydf 640 GCTCAGGGGCTGGTCAGTTTAAATATGCAGCTGGACGCTATTCATGTTCA 689
BSNT_00931___ 630 TCTCGCCAAAGGCAACACAGAGAGAGCGAAGGAAATCATACAACAATCGA 679
|||||||||||.|||||||||||||||.||.||||||.|.||||||||.|
BL03938___ydf 690 TCTCGCCAAAGACAACACAGAGAGAGCAAAAGAAATCGTTCAACAATCTA 739
BSNT_00931___ 680 TGAAAAGAGTGAAAAGCACATTAGCTGATGCACGTTCAGCTATTGACGAT 729
||||.|||||||||||||||.|||||||||||||||||||.|||||||||
BL03938___ydf 740 TGAATAGAGTGAAAAGCACACTAGCTGATGCACGTTCAGCGATTGACGAT 789
BSNT_00931___ 730 CTCCGCAGAAAATCAGAAGAAATCGGTGTTTTAAAAGAAAGAATTACCTC 779
||.|||||.||||||||||||||||||.||||||||||||||||||||||
BL03938___ydf 790 CTGCGCAGCAAATCAGAAGAAATCGGTTTTTTAAAAGAAAGAATTACCTC 839
BSNT_00931___ 780 GCTAATGGATCATTTTATAGAGTCGACAGGCATGGCTTGTTTATTAGATT 829
..||||||||||||||..|||||||||||||||||||||.||.|||||.|
BL03938___ydf 840 ATTAATGGATCATTTTCAAGAGTCGACAGGCATGGCTTGCTTTTTAGACT 889
BSNT_00931___ 830 ACAGATTGCATCAGGTGCTGGATGTGCGTACAGCTGAAAACTGTTATTAC 879
|||||||..|.||.||||.|||.||.||.|||||||||||||||||||||
BL03938___ydf 890 ACAGATTAGACCAAGTGCCGGACGTTCGAACAGCTGAAAACTGTTATTAC 939
BSNT_00931___ 880 ATCATTGGAGAATGCATGACGAATGCGGCAAAGCATGCTGAGGCGAAAAC 929
|||||||||||||||||..|||||||.|.||||||||||||.||..||||
BL03938___ydf 940 ATCATTGGAGAATGCATAGCGAATGCCGTAAAGCATGCTGAAGCAGAAAC 989
BSNT_00931___ 930 AATCTGGATATCCATTTGGGATGATGAAAAGGGAAGGCTCCATTTAACAG 979
.||||...|.|||||||||||||||||.|||.|.||||||||||||||.|
BL03938___ydf 990 GATCTCAGTGTCCATTTGGGATGATGATAAGAGGAGGCTCCATTTAACCG 1039
BSNT_00931___ 980 TTAAGGATAACGGCAAGGGATTTAATGTTGAAAAAGGAAAGAAAAAGAGA 1029
|.||||||||||||||.||||||.|||||||||||||.||||||||||||
BL03938___ydf 1040 TCAAGGATAACGGCAAAGGATTTGATGTTGAAAAAGGCAAGAAAAAGAGA 1089
BSNT_00931___ 1030 GGACATTATGGGCTTCTTGGCATACAAGAACGCGTCAGGGCAATAAATGG 1079
|||||||||||||||||.||||||.|||||||||||||.|||||.||.||
BL03938___ydf 1090 GGACATTATGGGCTTCTCGGCATAGAAGAACGCGTCAGAGCAATGAAAGG 1139
BSNT_00931___ 1080 CCAATTCAATATCAAGAGTGCAAAATTGAAAGGAACACAAATTGAGATCA 1129
||||||||||||.||||||.|||.||..|||||||||||||||||.||||
BL03938___ydf 1140 CCAATTCAATATAAAGAGTACAACATCTAAAGGAACACAAATTGATATCA 1189
BSNT_00931___ 1130 CTGTACCAATTCAGGGAGAGATGCAAGATGAATAA 1164
||||||||||||||||||||||||.||||||||||
BL03938___ydf 1190 CTGTACCAATTCAGGGAGAGATGCCAGATGAATAA 1224
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