Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05898 and BL03930
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:58
# Commandline: needle
# -asequence dna-align/BSNT_05898___ywaA.1.5803.seq
# -bsequence dna-align/BL03930___ywaA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05898___ywaA-BL03930___ywaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05898___ywaA-BL03930___ywaA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05898___ywaA
# 2: BL03930___ywaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1126
# Identity: 832/1126 (73.9%)
# Similarity: 832/1126 (73.9%)
# Gaps: 68/1126 ( 6.0%)
# Score: 3029.5
#
#
#=======================================
BSNT_05898___ 1 ATGACTAAACAAACGATTCGCGTTGAATTGACA--TCA--ACA--AAAAA 44
|||||.|||||||||||..|||| ||| ||| ||| |||||
BL03930___ywa 1 ATGACAAAACAAACGATCAGCGT-------ACAGCTCAGTACAGCAAAAA 43
BSNT_05898___ 45 ACCGAAA-CCAGACCCAAATCAGCT----TTCGTTCGGAAGAGTGTTTAC 89
|.|.||| |||||..|..|..|||| ||||..|||| ..|||||
BL03930___ywa 44 AGCAAAAGCCAGAGGCTGACAAGCTCGAATTCGGCCGGA----CCTTTAC 89
BSNT_05898___ 90 AGACCACATGTTTGTAATGGACTATGCGGCAGATAAAGGTTGGTACGATC 139
.||||||||||||.|.|||||||||.||||.||.||.||.|||.||||||
BL03930___ywa 90 CGACCACATGTTTATCATGGACTATACGGCTGAAAACGGCTGGCACGATC 139
BSNT_05898___ 140 CAAGAATCATTCCTTATCAGCCCTTATCAATGGATCCGGCCGCAATGGTC 189
|.||||||.|||||||.|||||..|...||||||.|||||.||||||||.
BL03930___ywa 140 CGAGAATCGTTCCTTACCAGCCGATTGAAATGGACCCGGCTGCAATGGTT 189
BSNT_05898___ 190 TATCACTACGGCCAAACCGTGTTTGAAGGGTTAAAGGCTTACGTGTCAGA 239
||.||||||||.|||.||||.||||||||.|||||.|||||..|.||| |
BL03930___ywa 190 TACCACTACGGACAATCCGTTTTTGAAGGATTAAAAGCTTATTTATCA-A 238
BSNT_05898___ 240 G-GATGACCATGTTCTGCTTTTCAGACCGGAAAAAAATATGGAACGCCTG 288
| ||.|.|...|||||.||.||||||||.||||||||..|.||..|.||.
BL03930___ywa 239 GCGAAGGCAGAGTTCTTCTGTTCAGACCTGAAAAAAACTTCGAGAGACTC 288
BSNT_05898___ 289 AATCAATCAAACGACCGCCTCTGCATCCCGCAAATTGATGAAGAACAGGT 338
|||.||||.|||||||||||||||||.||.|...|||||...|||...||
BL03930___ywa 289 AATAAATCCAACGACCGCCTCTGCATTCCCCGGGTTGATCCTGAAATCGT 338
BSNT_05898___ 339 TCTTGAAGGCTTAAAGCAGCTTGTCGCA-ATTGATAAAGACTGGATTCCA 387
|||.|||||..|.||||||||.|| .|| ||.||.||.||.||||||||.
BL03930___ywa 339 TCTGGAAGGGCTGAAGCAGCTGGT-TCAGATCGACAAGGAATGGATTCCT 387
BSNT_05898___ 388 AATGCGGAGGGCACGTCCCTTTACATCCGTCCGTTCATCATCGCAACCGA 437
.|.||.|||||.||.||||||||.||||||||||||||.||..||||.||
BL03930___ywa 388 CAAGCTGAGGGGACATCCCTTTATATCCGTCCGTTCATTATTTCAACAGA 437
BSNT_05898___ 438 GCCTTTCCTTGGTGTTGCGGCATCTCATACGTATAAGCTCTTGATCATTC 487
.||.|.||||||.||.||..||||..|||.||||||..|..||||||||.
BL03930___ywa 438 ACCGTACCTTGGCGTCGCCCCATCCAATATGTATAAAATGCTGATCATTT 487
BSNT_05898___ 488 TTTCTCCGGTCGGCTCTTATTACAAAGAAGGCATTAAGCCG----GTCAA 533
|.||.||||||||.|||||||||||||||||||| ||| ||.||
BL03930___ywa 488 TATCGCCGGTCGGATCTTATTACAAAGAAGGCAT----CCGCCCTGTGAA 533
BSNT_05898___ 534 AATCGCTGTTGAAAGTGAATTTGTCCGTGCGGTAAAAGGCGGAACAGGAA 583
|||.|||||||||||.||||||||||||||.||...||||||.|||||.|
BL03930___ywa 534 AATTGCTGTTGAAAGCGAATTTGTCCGTGCTGTGGCAGGCGGTACAGGCA 583
BSNT_05898___ 584 ATGCCAAAACCGCAGGAAACTATGCTTCAAGCTTAAAAGCGCAGCAGGTC 633
||||.|||||.||.||||||||.|||.|.|||.|.||.||.|||.|.||.
BL03930___ywa 584 ATGCAAAAACGGCCGGAAACTACGCTGCGAGCCTGAAGGCTCAGGAAGTT 633
BSNT_05898___ 634 GCCGAAGAG-AAAGGATTTTCCCAAGTGCTCTGGCTGGACGGCATTGAGA 682
||.||| || |||||.||.||.||||||||.|||||.|||||..||||.|
BL03930___ywa 634 GCGGAA-AGCAAAGGCTTCTCACAAGTGCTGTGGCTTGACGGAGTTGAAA 682
BSNT_05898___ 683 AGAAATACATCGAAGAAGTCGGAAGCATGAACATCTTCTTCAAAATCAAC 732
||||||||||.||||||||.||.|||||||||||||||||||||||||.|
BL03930___ywa 683 AGAAATACATTGAAGAAGTAGGCAGCATGAACATCTTCTTCAAAATCAGC 732
BSNT_05898___ 733 GGTGAAATCGTAACACCGATGCTGAACGGGAGCATCCTGGAAGGCATTAC 782
||||||||.||.||.|||...||.|||||.|||||..|||||||||||||
BL03930___ywa 733 GGTGAAATTGTCACTCCGGCTCTAAACGGAAGCATTTTGGAAGGCATTAC 782
BSNT_05898___ 783 GCGCAATTCAGTCATCGCCTTGCTT-AAGCATTGGGGCCT-TCAAGTTTC 830
|.|.||.||.|||||| |.|..||| ||.||.|||||.|| || .||..|
BL03930___ywa 783 GAGAAACTCCGTCATC-CATCTCTTAAAACAATGGGGACTCTC-CGTAAC 830
BSNT_05898___ 831 AGAACGAAAAATTGCGATCGATGAGGTCATCCAAGCCCATAAAGACGGCA 880
.|||.||||||||.|..|.|||||..|..|.||.||.||.|||||||||.
BL03930___ywa 831 CGAAAGAAAAATTTCAGTTGATGAACTGGTTCAGGCTCACAAAGACGGCC 880
BSNT_05898___ 881 TCCTGGAAGAAGCCTTCGGAACAGGTACAGCAGCTGTTATTTCCCCAGTC 930
|.||.||.|||||.|||||.||.||.||.||.|||||.||||||||.|||
BL03930___ywa 881 TGCTTGAGGAAGCATTCGGCACCGGAACCGCCGCTGTCATTTCCCCCGTC 930
BSNT_05898___ 931 GGCGAGCTGATCTGGCAGGATGAAACACTTTCGATCAACAACGGTGAAAC 980
|||||||||||||||.|.||.||||..|||..|||||||||||||.||||
BL03930___ywa 931 GGCGAGCTGATCTGGAAAGACGAAAGCCTTGTGATCAACAACGGTCAAAC 980
BSNT_05898___ 981 AGGAGAAATCGCAAAAAAACTATATGACACGATTACAGGCATTCAAAAAG 1030
.|||||||||||.||||..||.||..|.|||||.||.||.||||||||||
BL03930___ywa 981 TGGAGAAATCGCCAAAAGGCTCTACCAAACGATCACCGGTATTCAAAAAG 1030
BSNT_05898___ 1031 GCGCTGTCGCAGACGAATTCGGATGGACGACCGAAGTCGCAGCGCTGACT 1080
|||||.|..|.|||..||||||.|||||....||||| |
BL03930___ywa 1031 GCGCTTTGCCTGACACATTCGGCTGGACAGTTGAAGT------------T 1068
BSNT_05898___ 1081 GAAAGCAAGTAA-------------- 1092
||.| ||||||
BL03930___ywa 1069 GATA--AAGTAAGCCAGTCCTGCTAA 1092
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