Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04935 and BL03929
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:07
# Commandline: needle
# -asequence dna-align/BSNT_04935___yvqJ.1.5803.seq
# -bsequence dna-align/BL03929___yvqJ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04935___yvqJ-BL03929___yvqJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04935___yvqJ-BL03929___yvqJ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04935___yvqJ
# 2: BL03929___yvqJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1310
# Identity: 893/1310 (68.2%)
# Similarity: 893/1310 (68.2%)
# Gaps: 88/1310 ( 6.7%)
# Score: 2858.0
#
#
#=======================================
BSNT_04935___ 1 ATGGTGAATTTAATTGAAAGTGATAGCATCT-GGAAGAGAAATTTCAATT 49
|||| .|.||...|||.|| |||.||| ||||.|| ||||.||..|
BL03929___yvq 1 ATGG----ATCAAACAAAATTG--AGCGTCTGGGAAAAG-AATTACACGT 43
BSNT_04935___ 50 ATCTGTTTTTCTCAAGAATAGTCAAGATATCCGGCGATATG-TTCGCATT 98
..||.||..||||.||..||.||||.||.||.|..|| .|| ||.||.||
BL03929___yvq 44 TCCTTTTCATCTCCAGGCTAATCAAAATCTCTGCTGA-CTGTTTTGCCTT 92
BSNT_04935___ 99 TAATTCAATATTATGGTTTTTAATTTATGACGGCAAAGGTGCGATCGGCA 148
.|||||.||.||||||||||||||.|.||||||.||||||||.|||||||
BL03929___yvq 93 CAATTCTATTTTATGGTTTTTAATCTTTGACGGAAAAGGTGCAATCGGCA 142
BSNT_04935___ 149 -----CTGCTTTATTGATTGCTGTCACGTTTTTGCCGGAAGCCGTTCTGG 193
|||||| .||||.|||||.|||.|.||.||||||.||.|||
BL03929___yvq 143 CTTCCCTGCTT-----CTTGCCGTCACTTTTCTCCCCGAAGCCTTTTTGG 187
BSNT_04935___ 194 CGCCTGTGACGGGGCCTTTTATGAAACAG-ACCACGCTGAAATTCTGGAT 242
||||..|.||.||||||||..|.||| || |.|.|.||||||||||||||
BL03929___yvq 188 CGCCGATTACAGGGCCTTTAGTCAAA-AGAAGCGCCCTGAAATTCTGGAT 236
BSNT_04935___ 243 GTACTTTTCAGATCTGACAAGGGCGGCGATTGTTTTGATTATCCCTCTAT 292
|||||||||.|||.|.||||||||.||..|.||..|.|.|||.||..|.|
BL03929___yvq 237 GTACTTTTCGGATTTAACAAGGGCAGCCGTCGTCATTACTATACCGATTT 286
BSNT_04935___ 293 GTCATTTTGCGGGCTTCTCTCCGCTGTGGTTTGTCAT-GACACTTATGAT 341
|..||||....|||||.||.|||.||||||||||..| |.| ||.|||||
BL03929___yvq 287 GCTATTTAAACGGCTTTTCACCGATGTGGTTTGTTTTAGGC-CTCATGAT 335
BSNT_04935___ 342 TGTGCATTCAGCTACTGGAGCTGCCTACAATCCCGCCTCTAT--CGCTTT 389
..|.|||||.||.||.||.||..|.||.||.||.||.||.|| ||| |
BL03929___yvq 336 CATCCATTCGGCAACAGGCGCGACATATAACCCGGCGTCAATTACGC--T 383
BSNT_04935___ 390 GATTCCTCAAATCGTCAATGAACAGGGCATTCAAAAAGCAAACGCTGTGC 439
||||||.||.|||||.||.|||.|...|||.||||||||.|||||..|.|
BL03929___yvq 384 GATTCCGCAGATCGTGAACGAAAATCTCATCCAAAAAGCCAACGCGATTC 433
BSNT_04935___ 440 TGCAATCCTCCGCTCAAATTGTCCGGCTTGGGGCTGTCACATTATGCGGC 489
|.||.||.||..|..||||..||.||||.||.||.||.|||||.|||||.
BL03929___yvq 434 TCCAGTCTTCTTCAGAAATCATCAGGCTGGGAGCCGTTACATTGTGCGGA 483
BSNT_04935___ 490 GCTTTTCTTACGTTTATCAGTCCT-------------TCTTATACCATGC 526
|...|.||.||.||||||.||||| ||||.| |||
BL03929___yvq 484 GTGCTGCTGACTTTTATCGGTCCTGCAACGACTTTGGTCTTTT--CAT-- 529
BSNT_04935___ 527 TTATCGCACTTGTGCTCTATTTGGTGTCGGGTTTTCTCGTTCTTTTTATT 576
||||| .|.|||.|..|.|||||..|..||.|.||||..||.
BL03929___yvq 530 TTATC---------TTTTATATCATATCGGGCCTATTCATGCTTTGCATC 570
BSNT_04935___ 577 AAGTACACTGCGGTTGAAT--------CTCAATCAGAGTCTGCGGTTGTT 618
||.|||| |.|| ||||.|||.|||||..|..|.||
BL03929___yvq 571 AAATACA--------GCATCACCCGGACTCATTCACAGTCTAAGTCTCTT 612
BSNT_04935___ 619 ACACAGAGAGGCACATATATCGGAAGACTGAAACGCGGCTTTAGGCTCGT 668
.|.||.|||||.||||||.|.|..|||.|.|||.|.||.||||...|.||
BL03929___yvq 613 GCTCAAAGAGGTACATATTTTGCGAGATTAAAAAGAGGATTTACATTGGT 662
BSNT_04935___ 669 CAGAAAACACCAGATTTTATATCCGCTCGCCATTTACTGTATCTTTATGA 718
.|.|||.|||.|.||.||||||||||||||.|||||.||.|||||.||||
BL03929___yvq 663 GAAAAACCACAAAATATTATATCCGCTCGCGATTTATTGCATCTTCATGA 712
BSNT_04935___ 719 ATTTCGCGGCTGCCCCATGGGAAGCGCTCTCTGCCGTATACGTTGCGGAA 768
|..|.||||||.|.||.||||||||.||.||.||.|||||.|||||.||.
BL03929___yvq 713 ACCTGGCGGCTTCACCCTGGGAAGCCCTTTCCGCGGTATATGTTGCTGAG 762
BSNT_04935___ 769 GATTTAAACGGAGAGCCGATCGTTTACTCGCTGTTAAAAGCCACCACTGC 818
||||||||||||..||||.||.|..||||||||.|.||.||.||.||.||
BL03929___yvq 763 GATTTAAACGGAACGCCGTTCATCCACTCGCTGCTGAAGGCGACGACGGC 812
BSNT_04935___ 819 CGGGGGTGCGTTTTTATTAGGGTTTGTGCTGGCGAAAGTCAAAGTAAACA 868
.||.||.||.||||||.|.||.|||.|.||.||.|||||.|||.|.||||
BL03929___yvq 813 AGGAGGAGCATTTTTACTGGGATTTATCCTTGCAAAAGTAAAAATCAACA 862
BSNT_04935___ 869 GGTACGG----CTTGTTATTCGTCACTGCTGGCATTATTGAAGGATTTGC 914
||||||| |||.||||| ||.||.||||||.|.|||||....||
BL03929___yvq 863 GGTACGGACTCCTTTTTATT----ACGGCAGGCATTCTCGAAGGTGCAGC 908
BSNT_04935___ 915 TTTCTTTATTACCGGGATGAACACCTTTTTGCCGCTCGTCTTTTTCGCTG 964
||..|||||..|.||..||||.||.||..||||||||||.|||.||||.|
BL03929___yvq 909 TTATTTTATCGCAGGACTGAATACTTTCCTGCCGCTCGTATTTCTCGCCG 958
BSNT_04935___ 965 CTTTTACCTTTGGTGCCGCAGTCAGTGCTGTTAATGTTCCTGAGTACACG 1014
|.|||.|.||.||.||.||..||||..|..|||||||.||.||.|.||||
BL03929___yvq 959 CCTTTGCATTCGGGGCAGCCATCAGCTCGATTAATGTCCCCGAATTCACG 1008
BSNT_04935___ 1015 ATTATCCAGACGTCTGTGGATAGTGAGGATCAGCCGCAGGTTTACGCCGT 1064
|||||||||||.|||||.||..|.||.||.|||||.||.||.|..||.||
BL03929___yvq 1009 ATTATCCAGACATCTGTCGAAGGGGATGACCAGCCTCAAGTGTTTGCAGT 1058
BSNT_04935___ 1065 TATACATATGATCTCAAATATTTCGATTCCTGCCGGAGCTGTCATT---T 1111
.||.|||||||||.|||||.|.|||.|||||...||.|| .||| |
BL03929___yvq 1059 CATCCATATGATCACAAATCTATCGCTTCCTTTAGGGGC---AATTGCCT 1105
BSNT_04935___ 1112 GCGGGTATGCCGC--TAATGCTTTCGGCTCAGGAACAGTGATTGCTGCCG 1159
||||.|||||||| .||||||| |||.|.||||..||||||||...||
BL03929___yvq 1106 GCGGATATGCCGCAAAAATGCTT--GGCGCGGGAAACGTGATTGCAATCG 1153
BSNT_04935___ 1160 GCGGGATTGTCGAAATTATTGCGGGTATCGGAATCTTGCTGTTTACAAAA 1209
||||..|..|||||||.||||||||.|||||.|||.|..|.|||||..|.
BL03929___yvq 1154 GCGGCTTCATCGAAATCATTGCGGGCATCGGCATCCTCATATTTACTCAG 1203
BSNT_04935___ 1210 CTGGCCAAAGCAGAAAGGTCCGACCTGATTAAAGAAAGGGAAGCAAGTGT 1259
||.||||..||.....||||.||.|||||.|||||||..|||||.||.|.
BL03929___yvq 1204 CTTGCCAGGGCCCGGCGGTCAGATCTGATAAAAGAAAAAGAAGCTAGCGC 1253
BSNT_04935___ 1260 TCATCTGTAA 1269
..||.||||.
BL03929___yvq 1254 AAATATGTAG 1263
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