Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04935 and BL03929

See Amino acid alignment / Visit BSNT_04935 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:07
# Commandline: needle
#    -asequence dna-align/BSNT_04935___yvqJ.1.5803.seq
#    -bsequence dna-align/BL03929___yvqJ.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04935___yvqJ-BL03929___yvqJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04935___yvqJ-BL03929___yvqJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04935___yvqJ
# 2: BL03929___yvqJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1310
# Identity:     893/1310 (68.2%)
# Similarity:   893/1310 (68.2%)
# Gaps:          88/1310 ( 6.7%)
# Score: 2858.0
# 
#
#=======================================

BSNT_04935___      1 ATGGTGAATTTAATTGAAAGTGATAGCATCT-GGAAGAGAAATTTCAATT     49
                     ||||    .|.||...|||.||  |||.||| ||||.|| ||||.||..|
BL03929___yvq      1 ATGG----ATCAAACAAAATTG--AGCGTCTGGGAAAAG-AATTACACGT     43

BSNT_04935___     50 ATCTGTTTTTCTCAAGAATAGTCAAGATATCCGGCGATATG-TTCGCATT     98
                     ..||.||..||||.||..||.||||.||.||.|..|| .|| ||.||.||
BL03929___yvq     44 TCCTTTTCATCTCCAGGCTAATCAAAATCTCTGCTGA-CTGTTTTGCCTT     92

BSNT_04935___     99 TAATTCAATATTATGGTTTTTAATTTATGACGGCAAAGGTGCGATCGGCA    148
                     .|||||.||.||||||||||||||.|.||||||.||||||||.|||||||
BL03929___yvq     93 CAATTCTATTTTATGGTTTTTAATCTTTGACGGAAAAGGTGCAATCGGCA    142

BSNT_04935___    149 -----CTGCTTTATTGATTGCTGTCACGTTTTTGCCGGAAGCCGTTCTGG    193
                          ||||||     .||||.|||||.|||.|.||.||||||.||.|||
BL03929___yvq    143 CTTCCCTGCTT-----CTTGCCGTCACTTTTCTCCCCGAAGCCTTTTTGG    187

BSNT_04935___    194 CGCCTGTGACGGGGCCTTTTATGAAACAG-ACCACGCTGAAATTCTGGAT    242
                     ||||..|.||.||||||||..|.||| || |.|.|.||||||||||||||
BL03929___yvq    188 CGCCGATTACAGGGCCTTTAGTCAAA-AGAAGCGCCCTGAAATTCTGGAT    236

BSNT_04935___    243 GTACTTTTCAGATCTGACAAGGGCGGCGATTGTTTTGATTATCCCTCTAT    292
                     |||||||||.|||.|.||||||||.||..|.||..|.|.|||.||..|.|
BL03929___yvq    237 GTACTTTTCGGATTTAACAAGGGCAGCCGTCGTCATTACTATACCGATTT    286

BSNT_04935___    293 GTCATTTTGCGGGCTTCTCTCCGCTGTGGTTTGTCAT-GACACTTATGAT    341
                     |..||||....|||||.||.|||.||||||||||..| |.| ||.|||||
BL03929___yvq    287 GCTATTTAAACGGCTTTTCACCGATGTGGTTTGTTTTAGGC-CTCATGAT    335

BSNT_04935___    342 TGTGCATTCAGCTACTGGAGCTGCCTACAATCCCGCCTCTAT--CGCTTT    389
                     ..|.|||||.||.||.||.||..|.||.||.||.||.||.||  |||  |
BL03929___yvq    336 CATCCATTCGGCAACAGGCGCGACATATAACCCGGCGTCAATTACGC--T    383

BSNT_04935___    390 GATTCCTCAAATCGTCAATGAACAGGGCATTCAAAAAGCAAACGCTGTGC    439
                     ||||||.||.|||||.||.|||.|...|||.||||||||.|||||..|.|
BL03929___yvq    384 GATTCCGCAGATCGTGAACGAAAATCTCATCCAAAAAGCCAACGCGATTC    433

BSNT_04935___    440 TGCAATCCTCCGCTCAAATTGTCCGGCTTGGGGCTGTCACATTATGCGGC    489
                     |.||.||.||..|..||||..||.||||.||.||.||.|||||.|||||.
BL03929___yvq    434 TCCAGTCTTCTTCAGAAATCATCAGGCTGGGAGCCGTTACATTGTGCGGA    483

BSNT_04935___    490 GCTTTTCTTACGTTTATCAGTCCT-------------TCTTATACCATGC    526
                     |...|.||.||.||||||.|||||             ||||.|  |||  
BL03929___yvq    484 GTGCTGCTGACTTTTATCGGTCCTGCAACGACTTTGGTCTTTT--CAT--    529

BSNT_04935___    527 TTATCGCACTTGTGCTCTATTTGGTGTCGGGTTTTCTCGTTCTTTTTATT    576
                     |||||         .|.|||.|..|.|||||..|..||.|.||||..||.
BL03929___yvq    530 TTATC---------TTTTATATCATATCGGGCCTATTCATGCTTTGCATC    570

BSNT_04935___    577 AAGTACACTGCGGTTGAAT--------CTCAATCAGAGTCTGCGGTTGTT    618
                     ||.||||        |.||        ||||.|||.|||||..|..|.||
BL03929___yvq    571 AAATACA--------GCATCACCCGGACTCATTCACAGTCTAAGTCTCTT    612

BSNT_04935___    619 ACACAGAGAGGCACATATATCGGAAGACTGAAACGCGGCTTTAGGCTCGT    668
                     .|.||.|||||.||||||.|.|..|||.|.|||.|.||.||||...|.||
BL03929___yvq    613 GCTCAAAGAGGTACATATTTTGCGAGATTAAAAAGAGGATTTACATTGGT    662

BSNT_04935___    669 CAGAAAACACCAGATTTTATATCCGCTCGCCATTTACTGTATCTTTATGA    718
                     .|.|||.|||.|.||.||||||||||||||.|||||.||.|||||.||||
BL03929___yvq    663 GAAAAACCACAAAATATTATATCCGCTCGCGATTTATTGCATCTTCATGA    712

BSNT_04935___    719 ATTTCGCGGCTGCCCCATGGGAAGCGCTCTCTGCCGTATACGTTGCGGAA    768
                     |..|.||||||.|.||.||||||||.||.||.||.|||||.|||||.||.
BL03929___yvq    713 ACCTGGCGGCTTCACCCTGGGAAGCCCTTTCCGCGGTATATGTTGCTGAG    762

BSNT_04935___    769 GATTTAAACGGAGAGCCGATCGTTTACTCGCTGTTAAAAGCCACCACTGC    818
                     ||||||||||||..||||.||.|..||||||||.|.||.||.||.||.||
BL03929___yvq    763 GATTTAAACGGAACGCCGTTCATCCACTCGCTGCTGAAGGCGACGACGGC    812

BSNT_04935___    819 CGGGGGTGCGTTTTTATTAGGGTTTGTGCTGGCGAAAGTCAAAGTAAACA    868
                     .||.||.||.||||||.|.||.|||.|.||.||.|||||.|||.|.||||
BL03929___yvq    813 AGGAGGAGCATTTTTACTGGGATTTATCCTTGCAAAAGTAAAAATCAACA    862

BSNT_04935___    869 GGTACGG----CTTGTTATTCGTCACTGCTGGCATTATTGAAGGATTTGC    914
                     |||||||    |||.|||||    ||.||.||||||.|.|||||....||
BL03929___yvq    863 GGTACGGACTCCTTTTTATT----ACGGCAGGCATTCTCGAAGGTGCAGC    908

BSNT_04935___    915 TTTCTTTATTACCGGGATGAACACCTTTTTGCCGCTCGTCTTTTTCGCTG    964
                     ||..|||||..|.||..||||.||.||..||||||||||.|||.||||.|
BL03929___yvq    909 TTATTTTATCGCAGGACTGAATACTTTCCTGCCGCTCGTATTTCTCGCCG    958

BSNT_04935___    965 CTTTTACCTTTGGTGCCGCAGTCAGTGCTGTTAATGTTCCTGAGTACACG   1014
                     |.|||.|.||.||.||.||..||||..|..|||||||.||.||.|.||||
BL03929___yvq    959 CCTTTGCATTCGGGGCAGCCATCAGCTCGATTAATGTCCCCGAATTCACG   1008

BSNT_04935___   1015 ATTATCCAGACGTCTGTGGATAGTGAGGATCAGCCGCAGGTTTACGCCGT   1064
                     |||||||||||.|||||.||..|.||.||.|||||.||.||.|..||.||
BL03929___yvq   1009 ATTATCCAGACATCTGTCGAAGGGGATGACCAGCCTCAAGTGTTTGCAGT   1058

BSNT_04935___   1065 TATACATATGATCTCAAATATTTCGATTCCTGCCGGAGCTGTCATT---T   1111
                     .||.|||||||||.|||||.|.|||.|||||...||.||   .|||   |
BL03929___yvq   1059 CATCCATATGATCACAAATCTATCGCTTCCTTTAGGGGC---AATTGCCT   1105

BSNT_04935___   1112 GCGGGTATGCCGC--TAATGCTTTCGGCTCAGGAACAGTGATTGCTGCCG   1159
                     ||||.||||||||  .|||||||  |||.|.||||..||||||||...||
BL03929___yvq   1106 GCGGATATGCCGCAAAAATGCTT--GGCGCGGGAAACGTGATTGCAATCG   1153

BSNT_04935___   1160 GCGGGATTGTCGAAATTATTGCGGGTATCGGAATCTTGCTGTTTACAAAA   1209
                     ||||..|..|||||||.||||||||.|||||.|||.|..|.|||||..|.
BL03929___yvq   1154 GCGGCTTCATCGAAATCATTGCGGGCATCGGCATCCTCATATTTACTCAG   1203

BSNT_04935___   1210 CTGGCCAAAGCAGAAAGGTCCGACCTGATTAAAGAAAGGGAAGCAAGTGT   1259
                     ||.||||..||.....||||.||.|||||.|||||||..|||||.||.|.
BL03929___yvq   1204 CTTGCCAGGGCCCGGCGGTCAGATCTGATAAAAGAAAAAGAAGCTAGCGC   1253

BSNT_04935___   1260 TCATCTGTAA   1269
                     ..||.||||.
BL03929___yvq   1254 AAATATGTAG   1263


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