Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05740 and BL03918
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:50
# Commandline: needle
# -asequence dna-align/BSNT_05740___ywhC.1.5803.seq
# -bsequence dna-align/BL03918___ywhC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05740___ywhC-BL03918___ywhC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05740___ywhC-BL03918___ywhC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05740___ywhC
# 2: BL03918___ywhC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 738
# Identity: 456/738 (61.8%)
# Similarity: 456/738 (61.8%)
# Gaps: 126/738 (17.1%)
# Score: 1304.0
#
#
#=======================================
BSNT_05740___ 1 ------------------------------TTGGACCGTTTT-TTATATT 19
||.||||||||| |||| ||
BL03918___ywh 1 TTGTATATGAGAAAGAGGGAAAGCCACATTTTAGACCGTTTTCTTAT-TT 49
BSNT_05740___ 20 ATCCGTT--ATCTTTAATG---CCATACCTCGTCATCACGCTAATTG-TG 63
|||||.| | |||| ||.||..|.||..|.|| |.||| ||
BL03918___ywh 50 ATCCGCTGGA-----AATGATTCCGTATGTTGTTTTGAC---ACTTGCTG 91
BSNT_05740___ 64 TCG--TTTACGATGCACGAGCTTGCCCACGCTTATGTCGCATACAAATTC 111
.|| ||.||..||||.|||.|.|||||.||.|||||.||.|||||||||
BL03918___ywh 92 CCGCATTCACTGTGCATGAGGTCGCCCATGCGTATGTGGCTTACAAATTC 141
BSNT_05740___ 112 GGTGACGATACGGCGAAAAAACAAGGAAGACTGACGCTGAATCCCATTAA 161
||.||.||.|||||.|||...||.||.||.||||||||.||.||..||||
BL03918___ywh 142 GGCGATGAGACGGCCAAACGGCAGGGCAGGCTGACGCTCAACCCGCTTAA 191
BSNT_05740___ 162 ACACCTTGATCCGTTCGGAACCATTTTGA---TTCTGGTGGCCGGATTCG 208
.||.|||||||||||.|||||.||||||| ||.|..|| |||||||
BL03918___ywh 192 GCATCTTGATCCGTTTGGAACGATTTTGATCTTTATATTG---GGATTCG 238
BSNT_05740___ 209 GGTGGGCGCGCCCCATTCCCGTGAATCGCCGTTTCTTTAAGAAACCC-CG 257
|.|||||....||..|.|||||.||.|| |.|||.|||.|.|||||| .|
BL03918___ywh 239 GCTGGGCAAAGCCGGTGCCCGTTAACCG-CTTTTATTTTAAAAACCCGAG 287
BSNT_05740___ 258 GCTTGCTGGTGTGCTCGTATCTATAGCCGGGCCCGTCAGTAACCTGATTC 307
|||.||.||..|.|||||.||.||.|||||.||..||||.||.|||||.|
BL03918___ywh 288 GCTGGCCGGATTTCTCGTGTCAATCGCCGGACCGATCAGCAATCTGATCC 337
BSNT_05740___ 308 TTGCGTTTATTGGTTT-------CT--TTTTGTTAGTGTTGATGCATGC- 347
||||.||.||.||||| || ||||||..||| |.||
BL03918___ywh 338 TTGCTTTCATCGGTTTTATATTGCTGCTTTTGTCCGTG-------AAGCT 380
BSNT_05740___ 348 GTACGGAATGGAAATGCTTGCGGCGTT----CAGCACGGGGCTGGATCAG 393
||.|||.|.| .|||.|||.| ||| |||| ||..||..|||.
BL03918___ywh 381 GTCCGGGACG---CTGCCTGCCG-GTTTTTACAGC---GGTTTGCTTCAA 423
BSNT_05740___ 394 TTTTTTTCTATTTGGATACAGCTGAATCTTGTCTTGTTTTTATTTAATCT 443
||||||.|.||||||.|..|.||.||.||..|.||.|||.|.||||||.|
BL03918___ywh 424 TTTTTTACGATTTGGGTGAATCTCAACCTGCTTTTATTTCTGTTTAATTT 473
BSNT_05740___ 444 GCTGCCGCTTCCTCCGCTCGATGGCTATCGAATTATAGAAGATCTCGTTC 493
..|||||.|.||.||.||.||.||.|.|||..|||||.|.|||.|.||
BL03918___ywh 474 AATGCCGTTCCCGCCTCTTGACGGTTTTCGGGTTATACAGGATGTGGT-- 521
BSNT_05740___ 494 CGCC------GGGCGTGCG----TGCCAAAATGACGCAGGCGGAGAGCTA 533
|||| |.|||.||| ||.|.|||| |.| ||||| ||
BL03918___ywh 522 CGCCCCCGAAGTGCGGGCGAAGCTGTCGAAAT-ATG-AGGCG------TA 563
BSNT_05740___ 534 CGGCTTTATCGTATTTTTGGTGCTGTTTGTGACACCGCTAGGATCTTACG 583
|||||..|||||.|||.||.|..|..|..|.||||||||.||....||.|
BL03918___ywh 564 CGGCTCGATCGTCTTTCTGATTATCGTCATTACACCGCTTGGCCAATATG 613
BSNT_05740___ 584 TGCTGTGGCCGATGCTCAAT-----GCAGGAAGAGAT----TCGAT-TTT 623
|..|.||||||.|..|.||| ||.||||..||| ||||| |||
BL03918___ywh 614 TATTCTGGCCGTTTTTGAATGACGGGCGGGAATTGATCATATCGATATTT 663
BSNT_05740___ 624 AA-AGCTGTTTTCAGCGATATTTCAACCGCTTTTGTAG 660
|| ||| |||||| |..|||||..|||||
BL03918___ywh 664 AACAGC-GTTTTC----------CGGCCGCTGATGTAG 690
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