Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01388 and BL03903
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:54
# Commandline: needle
# -asequence dna-align/BSNT_01388___yfiN.1.5803.seq
# -bsequence dna-align/BL03903___yfiN.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01388___yfiN-BL03903___yfiN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01388___yfiN-BL03903___yfiN.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01388___yfiN
# 2: BL03903___yfiN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1424
# Identity: 670/1424 (47.1%)
# Similarity: 670/1424 (47.1%)
# Gaps: 544/1424 (38.2%)
# Score: 1210.5
#
#
#=======================================
BSNT_01388___ 1 GTGAAAAAAATTCTA--GC----------CATTTGCGGCATTGAGCTTTC 38
.|||||.||||.||| || || ||.||| .
BL03903___yfi 1 ATGAAAGAAATGCTATGGCTTGTCAAAAACA-------CACTGA-----A 38
BSNT_01388___ 39 TCTCATTTTTAAGAAGCCACAGAACTATTTGATCATGTTTG-----CTGC 83
|.|||.||||||.||| .|||.|.||.|..|..|||||| ||||
BL03903___yfi 39 TGTCACTTTTAAAAAG---AAGATCAATATCTTTCTGTTTGTATGTCTGC 85
BSNT_01388___ 84 CCCGCTTTTGCT-----TACCTTTGTAT---TTGGGAGTATGCTCAGCGG 125
|| ||||| || ||.|||| ||..|| |||.||
BL03903___yfi 86 CC-----TTGCTAGGCATA--TTCGTATCGCTTTTGA-------CAGAGG 121
BSNT_01388___ 126 CAATGATGATAAAG-------TGCGGCTTGCAATCGTTGATCAGGACGAC 168
.||..|||..|||| ||||..|.|.||||.|..||||.||||.|
BL03903___yfi 122 GAAGCATGGAAAAGACGGATTTGCGCGTCGGAATCATCAATCATGACGGC 171
BSNT_01388___ 169 --ACGATTCTCTCACAGCACTATATTCGGCAGCTAAAGGCGCATGATAAT 216
||||.|| ||..|.||||.|
BL03903___yfi 172 GGACGAATC-----------------------------GCCGAAGATACT 192
BSNT_01388___ 217 ATGTATACATTCGAA--------AGCATGTCTGAA-AACAAAGC-GTCAG 256
|.|.|| ..||.||| ||.||||| || |.||..|| |||||
BL03903___yfi 193 AAGGAT-TTTTTGAAGGGGATCGAGAATGTC--AACATCAGTGCGGTCAG 239
BSNT_01388___ 257 ATAAGCTGAA-ACAAAAG-AAAATTGC----CGGGATCAT-----CGTCA 295
..||||.||| ..||||| .||.|||| .||||.|.| |||||
BL03903___yfi 240 TGAAGCAGAAGGGAAAAGTCAAGTTGCGGCAGGGGAGCTTGATTGCGTCA 289
BSNT_01388___ 296 TTTCCCGCTCGTTCCAGACACAGCTGGAAAAAGGCAAACATCCTGAGCTG 345
||.| |.|.|||.|||||
BL03903___yfi 290 TTAC------------------GTTTGAACAAGGC--------------- 306
BSNT_01388___ 346 ATTTTC------CGT-CA---CGGC--CCCGAGCT---GTCGGAAGCGCC 380
||||| ||| || |||| .||| ||| .|||.||.|||
BL03903___yfi 307 -TTTTCTCAAAGCGTGCAGAGCGGCGAACCG-GCTCACATCGCAATCGC- 353
BSNT_01388___ 381 GAT-GGTCAAA--CAATATGCAGAAAGCAC---ATTGGCAA--------- 415
|| .|||||| | ||.||||.||| |||.|..|
BL03903___yfi 354 -ATCTGTCAAAGGC-----GCTGAAATCACCGGATTCGTGAAATCGTATG 397
BSNT_01388___ 416 -CGCTCA--ATATTCAGGTTACCGCGGCGAAAACGGCA-----GCTCAGA 457
|..||| |||||.|...||.||| ||.||.||||| ||.|||
BL03903___yfi 398 TCTATCATTATATTGATAATATCGC--CGCAATCGGCAAATCGGCGCAG- 444
BSNT_01388___ 458 CAGCGGG-----AGAGAGCT----GGAAGGCGGCGTATAAAA-----CAG 493
||| |.||.||| |||| ..|||||||| |.|
BL03903___yfi 445 ----GGGAATGAAAAGCGCTTTGAGGAA----ATGTATAAAAATTACCGG 486
BSNT_01388___ 494 TTTTCGCCAA--------AAAACATGAAGATTCAGCTCCGGCTGTAAAAC 535
..|||...|| ||||||| ||.||..|| |.
BL03903___yfi 487 AATTCTGAAACGAGTGTCAAAACAT----------CTACGATTG----AA 522
BSNT_01388___ 536 GACAGACGCTCAGCGATAAA---AAA---GAGGGTGCGGAAGCGAGTGAC 579
|||| |.||||.||| ||| ||.||.|||||.| ||
BL03903___yfi 523 GACA------CGGCGAAAAATAGAAACATGACGGAGCGGACG---GT--- 560
BSNT_01388___ 580 ACAGCCTCCAGAGCAGCAGGCTTTTCCATCCTGTTTGTCATGCTGACCAT 629
.|.||||| |.|||.|.|..||||| |
BL03903___yfi 561 ------------------CGGTTTTC--TTCTGATGGCGATGCT-----T 585
BSNT_01388___ 630 GAT-----GGGAGCGGCTGGAACCA--TTTTAG--AAGCAAGAA-AAAAC 669
..| |||| .|||.||.|.| |.|||| |||.||.|| |.|||
BL03903___yfi 586 TTTTCAGCGGGA--AGCTTGACCGAACTGTTAGTAAAGGAAAAAGAGAAC 633
BSNT_01388___ 670 GG--CGTCTGGTCCAGATTGCTT------ACAGCCTCTGTCAGCCGAGT- 710
.| |||.| |.||| |||| ||| |||| |
BL03903___yfi 634 AGAACGTAT--TTCAG---GCTTTTGACCACA-----------CCGA-TA 666
BSNT_01388___ 711 ---GGAAATCGGTGC-------------TGG------GTATGTGCTGT-- 736
|.||..|.||.| ||| |||||| ||||
BL03903___yfi 667 ACGGCAAGGCAGTACGTCATGTCCAATGTGGCCGTCAGTATGT-CTGTCA 715
BSNT_01388___ 737 ------------CCTTCTTTGTCATTGGCTGGATTCAATT----TGGCAT 770
|||| |||..||||| ||| ||..||
BL03903___yfi 716 TCACATGCCAAACCTT-TTTAACATTG----------ATTATGGTGAAAT 754
BSNT_01388___ 771 AT-TGCTTCTTTC--------AACCCATTGGCTGATTGGCA--TCAACTG 809
|| | |||| |||| |||| |||..|.
BL03903___yfi 755 ATGT-----TTTCCGGATGGAAACC------------GGCATCTCATTTT 787
BSNT_01388___ 810 GGGGAATCCGGCTGCGGT--TATTG-TATTAGTGTCACTTTTTCTATTGA 856
|||..|| |||.||||| |..|| |.||.|.| .|||
BL03903___yfi 788 GGGAGAT--GGCAGCGGTGCTGCTGATCTTTGCG------------CTGA 823
BSNT_01388___ 857 CCGTTGTCGGCATTGGATTGATGA---------TTGCGGCCAATGTCAGA 897
.||..||||||.|.|.||||||.| ||| ||| |.|
BL03903___yfi 824 GCGCGGTCGGCCTGGCATTGATCACAGTCGTCTTTG----CAA----ACA 865
BSNT_01388___ 898 ACGCCAGAACAGCAGCTCGCGTTTGGC--AACTTGTTCGTCATCGCAAC- 944
.|.||||..||.|.| |.||.|.|| ||.|||.|..|.||..|.||
BL03903___yfi 866 GCTCCAGGTCATCCG---GGGTATTGCGAAATTTGATTTTTATGCCGACG 912
BSNT_01388___ 945 ATGTATGGTGAGCGGGATG-TATTGGCCGATCGACAT--TGAACCGAAAT 991
|| .|||.|| .||||||| |.|||||||.|.||.|| || ||| |
BL03903___yfi 913 AT-CATGCTG-TCGGGATGTTTTTGGCCGGTTGAAATCATG--CCG---T 955
BSNT_01388___ 992 -TTATGCAATCC--ATCGCTGAATTTCTTCCGCAAAAGTGGG----CGAT 1034
||..|||...| |||||.||.|||||||||||...||||| .|||
BL03903___yfi 956 CTTTCGCACAGCGAATCGCGGACTTTCTTCCGCAGCGGTGGGTGTTGGAT 1005
BSNT_01388___ 1035 GAGCGGGC-----TGACGGAGATTATCGCTAACGGTGCCCGCGTCACAGA 1079
..||.||| ||..|||| ..||.| |.||.||| ||.
BL03903___yfi 1006 ACGCTGGCAAAATTGCAGGAG--------GGACAG---CAGCTTCA-AGG 1043
BSNT_01388___ 1080 TAT-TCTCGGAATCTGCGGCA----TCTTGCTTGCTTTTGCAGCAATCAC 1124
|.| |.|..||||.| || || ||.|||||||.||.||..||..
BL03903___yfi 1044 TCTGTATTTGAATAT----CATGATTC-TGTTTGCTTTCGCTGCTGTCTT 1088
BSNT_01388___ 1125 TTT-------------------------CGCA--------GCGGG----- 1136
||| |||| |.|.|
BL03903___yfi 1089 TTTCCTCATCGTCATTTACAAATTCAAACGCAATAATGATGTGAGAAACT 1138
BSNT_01388___ 1137 --GCTTAAGGCGCTCCGAGCCTAA 1158
||||||
BL03903___yfi 1139 TCGCTTAA---------------- 1146
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