Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01387 and BL03902
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:54
# Commandline: needle
# -asequence dna-align/BSNT_01387___yfiM.1.5803.seq
# -bsequence dna-align/BL03902___yfiM.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01387___yfiM-BL03902___yfiM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01387___yfiM-BL03902___yfiM.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01387___yfiM
# 2: BL03902___yfiM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1486
# Identity: 644/1486 (43.3%)
# Similarity: 644/1486 (43.3%)
# Gaps: 659/1486 (44.3%)
# Score: 1145.5
#
#
#=======================================
BSNT_01387___ 1 ------------ATGA-----AAAAAAGCATATGGATC-GCAT----GGA 28
||.| |||||||.|..||.||| ||.| |||
BL03902___yfi 1 TTGAATACACTCATCATTGCGAAAAAAGAAATTGTATCTGCTTTTCGGGA 50
BSNT_01387___ 29 AAGATGTCAAAATCAGAATCACGGACAGAAAAGGG------TTTATGAT- 71
||| |||||| | ||||||.|
BL03902___yfi 51 -------CAA----------ACGGAC--------GTTCCTTTTTATGCTG 75
BSNT_01387___ 72 GCTTATCCTAATGCCGCTGATCCTAACCTGTATTTTAGGCGCGGCGCTCG 121
||.|.|||.|.|| ..||||| || || |||||||||.|.||||
BL03902___yfi 76 GCATTTCCGATTG-TACTGAT--TA---TG-ATTTTAGGCACTGCGC--- 115
BSNT_01387___ 122 GATCAGTTGTTGACGGAGGCAGCCGGATT--GATGACATCAA-----AGT 164
|||||.|.|| || ||| ||.||| .||
BL03902___yfi 116 ----------TGACGAATGC-------TTTCGAT--CAACAAGCAGCGGT 146
BSNT_01387___ 165 CGGCTACATTC-----------AATCAGACCAGTCAGATGCAGCGAACAT 203
||||.|..||| || ||||.|.||.||.|.|||
BL03902___yfi 147 CGGCGAGGTTCGTGTTTTGTATAA--AGACAATTCTGACGGAGC------ 188
BSNT_01387___ 204 GTTTACAAAAGGTGTTCTCAAAAAAATGAAGTCGATAAAGGTCACAAAAG 253
||||.|..|||| ||..||||.|| ||| ||||
BL03902___yfi 189 GTTTTCGCAAGG----CTTTAAAACAT----TCG-TAAA----------- 218
BSNT_01387___ 254 CCGGCAGCGAGGACA----------AGATGAAAAAACTGCTT-------- 285
||.|||||..||| |..|.||||||.|| ||
BL03902___yfi 219 --GGAAGCGAAAACATCCGGCGTTCATTTTAAAAAAGTG-TTGTCCGATA 265
BSNT_01387___ 286 --GATGAA----AAGAAAATTGATGTAGGTATCGTCATCCCGAACCATTG 329
|||||| |||||| |||..|.| |
BL03902___yfi 266 TGGATGAAAAACAAGAAA----------------TCAAACAG-------G 292
BSNT_01387___ 330 GGAAGCCGGCAAAACCTCAGCTGTTGTTTATGCCACTCCTGATCAAACAT 379
|||| ||..|.|| ||.||| |
BL03902___yfi 293 GGAA-----------CTACGATG---------------CTTATC-----T 311
BSNT_01387___ 380 TGAAAAGTTCCATCATCG-AAACAGCTGCAAGCTCTTTTATAGAGCAATA 428
||| .|||| |||||||.|| |
BL03902___yfi 312 TGA----------GATCGAAAACAGCGGC--------------------A 331
BSNT_01387___ 429 TAAAGCGGTAAAGGAAGCCGCGTCAGCCTCAATGGACTACATCAGT---- 474
|.||||..|| |..||||||..|.|.||||
BL03902___yfi 332 TCAAGCTTTA-----------------CCAAATGGATAAAAACAGTATGA 364
BSNT_01387___ 475 AAAACAGAAGCTGTAAAGCAAGGAAAACTTGACCCTGCACAGTTTGCAGA 524
|||||||.| |.|..|||||||..| ||||| || |||||||.|
BL03902___yfi 365 AAAACAGCA----TTATTCAAGGAATGC-TGACC--GC---GTTTGCAAA 404
BSNT_01387___ 525 -------AA------AGCTGG-------CAAAG--GCGCTTGAAAAAGAA 552
|| ||| || ||||| ||.|.|||..|||
BL03902___yfi 405 CCGGTACAATGCCGCAGC-GGAGATCATCAAAGCTGCTCCTGAGCAAG-- 451
BSNT_01387___ 553 ACAGGTGACAAGCT----GACTATTGCA------GAAAAATCT------- 585
|.||.|.|..||| ||| ||| ||.||.|.|
BL03902___yfi 452 -CGGGCGCCGTGCTCGGGGAC----GCACCGGGCGACAATTATATCAAGG 496
BSNT_01387___ 586 ----GTCG-GCAGC--------AAGGCCGTTACCAGTT---TTCAATACT 619
|||| .|||| ||.|| ||||.| |..|.||.|
BL03902___yfi 497 AGACGTCGCTCAGCTCAGACAGAAAGC-----CCAGCTCCATGGATTATT 541
BSNT_01387___ 620 ATTCGGCGGCAAT---------------GCTTTGCATGTTTAT------- 647
||.|||..||.|| |||||.|| ||..||
BL03902___yfi 542 ATGCGGTTGCCATGACCACTCTGATCGCGCTTTACA-GTGCATTAAGCGC 590
BSNT_01387___ 648 --GCTGTTTCATATG-------------------ACAGTCG---GG---- 669
|||.|||.|||.| ||||.|| ||
BL03902___yfi 591 CAGCTATTTAATAAGGGGGGAGCGGCTTAGAAAAACAGCCGACCGGCTGA 640
BSNT_01387___ 670 --GCGAAATCGTTTTTACAGGAAAAGGATACGGAGACGCTTGCCAGAATG 717
|||..|.||.|| || .||||| .||||...||||..|.|.|
BL03902___yfi 641 TCGCGGCACCGGTT---CA--TAAAGG----CGAGATCTTTGCGGGTAAG 681
BSNT_01387___ 718 CTGATGCCGCCTGCGCAAAAATCCGTCATTCTCTTCGGA-AAATGGCTTG 766
||||| || |||| ||||..|| |||.||.||
BL03902___yfi 682 CTGAT--CG-----GCAA-------------TCTTGTGACAAACGGATT- 710
BSNT_01387___ 767 GGACGTATCTGTTTGCCATCATACAATTTTTCATATTTCTGATCGTCACA 816
||.|.|.|||||| .|||||.||
BL03902___yfi 711 ----GTGTATTTTTGCC------------------------GTCGTCGCA 732
BSNT_01387___ 817 ATCA------ATGTATTTGGTGTGGACTGGGGCGGTAATCTGCTGTTTGT 860
.||| |.||||||...|.|.||||||
BL03902___yfi 733 GTCAGCAAATACGTATTTAAAGCGTACTGGG------------------- 763
BSNT_01387___ 861 GAGTGTA-CTCGGGCTTTCTTACGCCGCC--GCTGTATCTGGCAT----T 903
|||.|.| ||.|||||| .|| ||.||| ||||| || .|||| |
BL03902___yfi 764 GAGAGCATCTTGGGCTT--GTA-GCGGCCGTGCTGT-TC-AGCATCGTAT 808
BSNT_01387___ 904 TCAATGCTGCTTGCGTCTTTCCTCAGCG------ATATGA---------- 937
|...|||.|..|||.|| ..||||.||| ||.|||
BL03902___yfi 809 TGTTTGCCGTATGCCTC-GGCCTCGGCGTCAGTTATTTGACGAGAACGGG 857
BSNT_01387___ 938 --AATCTGCGGATGCGATCGGCGGCTTCGGCATTCA-------ATTGC-- 976
||.|.||.|..||||| ||||.| |||.|
BL03902___yfi 858 GGAAGCGGCAGTGGCGAT------------CATTAACGTGTTGATTCCGC 895
BSNT_01387___ 977 ---TTGCGGTTCTCGGCGGATCCATGCTGCCGCTGTATCAATTTCC---- 1019
||||..||.||||.|| |||| ||| |||||
BL03902___yfi 896 TAGTTGCATTTTTCGGGGG-----------CGCT-TAT---TTTCCTGTC 930
BSNT_01387___ 1020 ---------GGACGTCTTGCAGTCTAT-ATC-CAAAGCGGTGCCAAATCG 1058
|.|.||.||..|| ||.| ||| ||.|.|.||..| ||
BL03902___yfi 931 GACGATGCGGAAGGTGTTTTAG-CTTTGATCACAGACCTGTCTC----CG 975
BSNT_01387___ 1059 CTGGGCGCTTG-----ACG--GCTTTCTT--------TCTTTAATGGAAG 1093
|| |||.|| ||| |||.|..| |.|||
BL03902___yfi 976 CT---CGCCTGGACGAACGAAGCTATTATGAACATCATATTT-------- 1014
BSNT_01387___ 1094 GGGGA---------GGCTGGGCTGACCTTCAAAAGCCTGTGCTTCTTTTT 1134
|.||| |||.||||| ||||| .|.|.||
BL03902___yfi 1015 GCGGACGATTTAGCGGCAGGGCT-----------GCCTG----CCATCTT 1049
BSNT_01387___ 1135 GCGG--CGATCGGC-------------TTTTGTTCACTTGCAATTGGTAT 1169
||.| | |||||| ||.||.|.| ||||..||| |
BL03902___yfi 1050 GCTGAAC-ATCGGCTTATCCCTGTTATTTCTGCTGA-TTGCCGTTG---T 1094
BSNT_01387___ 1170 CAGACGGCTTCATACAAGATAA-------------- 1191
| ||||...|||.||
BL03902___yfi 1095 C--------TCATTGCAGAGAAGGGAGGGGCTGTAG 1122
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