Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01385 and BL03901
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:54
# Commandline: needle
# -asequence dna-align/BSNT_01385___yfiL.1.5803.seq
# -bsequence dna-align/BL03901___yfiL.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01385___yfiL-BL03901___yfiL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01385___yfiL-BL03901___yfiL.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01385___yfiL
# 2: BL03901___yfiL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1071
# Identity: 595/1071 (55.6%)
# Similarity: 595/1071 (55.6%)
# Gaps: 270/1071 (25.2%)
# Score: 1354.0
#
#
#=======================================
BSNT_01385___ 1 ------GTGCTGCAAGCAGAAA-ACATCAAAAAGGCATATG--GAAAAAA 41
||..|| |||| .||| |||.|| |||||||
BL03901___yfi 1 ATGAATGTATTG------GAAATCCAT--------CATCTGACGAAAAAA 36
BSNT_01385___ 42 ------AACAATCGT-------GA-AAGGTATTTCTTTTTCCCTCCAAAA 77
.|| .|||| || || |||.||..|.||..||.||.|
BL03901___yfi 37 TTCGGCGAC-TTCGTTGCCGTCGACAA--TATATCACTCTCGATCGAAGA 83
BSNT_01385___ 78 GGGGGAGTCGTTCGGTCTGCTCGGGCCAAACGGTGCCGGGAAGTCCACAA 127
|||.||....||.||..|||||||..|||||||.||.||.|||...||.|
BL03901___yfi 84 GGGCGAAATATTTGGATTGCTCGGCGCAAACGGGGCGGGAAAGAGTACGA 133
BSNT_01385___ 128 CCATCTC-GATGATTTCCGGCCTTGT---GCCGC-ATGACAGCGGGAACA 172
|||| || .||||||| ||...|||| |..|| ||||..||| |.|
BL03901___yfi 134 CCAT-TCACATGATTT-CGAGTTTGTTGAGAAGCAATGAAGGCG---AGA 178
BSNT_01385___ 173 TCACGGTGGGCGGCTATGTCATCGGAAAAGAAACGGCCAAAGCGAAACA- 221
|||||.| || ||||||||.| ||..||||||||
BL03901___yfi 179 TCACGAT-----------TC-TCGGAAAAAA------CATTGCGAAACAC 210
BSNT_01385___ 222 -----------------AAAAATCGGCATTGTTCCGCAGGAAATTG-CAT 253
.||.|||||||||||.||||||||..|.| |||
BL03901___yfi 211 CGCAAGTTCGCCAAGATGAACATCGGCATTGTCCCGCAGGATCTGGCCAT 260
BSNT_01385___ 254 TATATCCGACA---CTGACGGCTCATGAGAATCT--TATGTTTTG--GGG 296
| |.||| | .|.|||||..|||..|||.| .||.||||| |||
BL03901___yfi 261 T---TACGA-AGATTTAACGGCATATGCAAATGTGAAATTTTTTGCCGGG 306
BSNT_01385___ 297 GAAAATGTACGGACTTACGCACGGTGAGGCCAA---AAAAAGATCG---- 339
.|.||.||.|| ||.||| ||||.| |.|.| ||||
BL03901___yfi 307 ----CTTTATGGTCT---GCGCGG---GGCCCATTTACACA-ATCGGGTT 345
BSNT_01385___ 340 GCAGAGGTCCTTG-AATATGTCGGTCTGACTGAGCGGGCTAA--AGATAA 386
|.|||.| |.||| |.|..||||||.|.|.||| ||| |.|.||
BL03901___yfi 346 GAAGAAG-CATTGCAGTTCGTCGGTTTAAGTGA------TAAGCATAAAA 388
BSNT_01385___ 387 GATT----GAAACGTTCTCCGGGGGGATGAAACGAAGAATCAACATCG-- 430
|.|| .|||..||.||.||.|||||||||.||||..||||.||||
BL03901___yfi 389 GCTTCCCGAAAAATTTTTCAGGCGGGATGAAAAGAAGGCTCAATATCGCC 438
BSNT_01385___ 431 -GTGCGGCTTTAAT---GCATAAGCCCGAGCTGCTGATTATGGATGAACC 476
|.||| || .||.|.|||..|||||.|.||.|||||.|||||
BL03901___yfi 439 TGCGCG------ATCGCCCACAGGCCAAAGCTGATCATCATGGACGAACC 482
BSNT_01385___ 477 GACTGTCGGTATTGACCCTCAATCGAGAAATCACATTTTAGAAACGGTCA 526
|||.||.||.|||||.||.||.|||||||||.|.|||||.|||.|.||||
BL03901___yfi 483 GACGGTTGGAATTGATCCGCATTCGAGAAATTATATTTTGGAATCCGTCA 532
BSNT_01385___ 527 AAAAGCTCAACGAAACGGGCATG-ACGGTGATCTATACGAGTCATTACAT 575
|||||.|.||.|..|.||| ||| |||.|.||.||.|||||.|||||.||
BL03901___yfi 533 AAAAGTTAAATGCGATGGG-ATGCACGATTATTTACACGAGCCATTATAT 581
BSNT_01385___ 576 GGAAGAGGTTGA----GTTTTTATGCGACAGGATCGGGATAATTGATCAG 621
|||.||.||||| .|.|.||..| ||||||..||..|||||||.
BL03901___yfi 582 GGAGGAAGTTGAAGAGATCTGTACTC----GGATCGCCATCGTTGATCAC 627
BSNT_01385___ 622 GGGGAAATGATTG-CGATTGGCACAAAAACTGATTTGTGCAGCCGCCTTG 670
||..||||.||.| ||| .||.||.|| |.|||.|| ||
BL03901___yfi 628 GGAAAAATTATCGCCGA-GGGAACGAA-----------GGAGCAGC--TG 663
BSNT_01385___ 671 GGGGCGA----TACCATC---------ATTCAGCTCACGG--------TC 699
....||| |||||.| |||||..|| | ||
BL03901___yfi 664 AAATCGATCATTACCAACACAAAAGATATTCAAGTC---GTTCTTAAATC 710
BSNT_01385___ 700 AGCGGA----ATCGATGAAGCGTTTCTTTTGGCGATC------CGTTCCC 739
.||||| ||||| |.|.|||||.| ||.||..
BL03901___yfi 711 TGCGGAAAATATCGA-----------TATCGGCGAACTGAAAACGATCAG 749
BSNT_01385___ 740 TGGCTCATGTGAATGATGTAACAG-TCCAGGAGTCAGAAC--TCAAAATT 786
.||| ||| ||.|...|.| ||..|.||.||..|| |||||||
BL03901___yfi 750 CGGC----GTG---GAAGCGGCCGTTCTTGAAGACAATACGATCAAAAT- 791
BSNT_01385___ 787 GACATTTCTGCGGCTCATCATGAGAAAGTCGTCACGAGT------CTGCT 830
||..||.|..|| ||.|||||..|.| |.|.|
BL03901___yfi 792 --CAACTCGGATGC------------AGGCGTCAATAATTTAAACCAGAT 827
BSNT_01385___ 831 TGCTG--AAGCCGCTGCTCATCATATAAACCTGCTGTC-----TC-TTCA 872
|..|| ||||.|.|| |.|||| |..|.| || ||||
BL03901___yfi 828 TATTGAAAAGCTGATG--------AAAAAC--GGGGCCGAGATTCGTTCA 867
BSNT_01385___ 873 GGTGCAGGAA------CCGAATCTGGAGCGCCTGTTTCTGAATCTGACAG 916
.||.|.||| ||.|||.||||...|.||||.||||...||||.|
BL03901___yfi 868 -TTGGAAGAAAAAGCGCCTAATTTGGAAACCGTGTTCCTGACCTTGACCG 916
BSNT_01385___ 917 GCCGCAC-GTTGCGGGATTAG 936
|..| || ||||||.||||||
BL03901___yfi 917 GAAG-ACAGTTGCGCGATTAG 936
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