Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01380 and BL03900
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:54
# Commandline: needle
# -asequence dna-align/BSNT_01380___yfiJ.1.5803.seq
# -bsequence dna-align/BL03900.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01380___yfiJ-BL03900.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01380___yfiJ-BL03900.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01380___yfiJ
# 2: BL03900
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1426
# Identity: 633/1426 (44.4%)
# Similarity: 633/1426 (44.4%)
# Gaps: 593/1426 (41.6%)
# Score: 1073.0
#
#
#=======================================
BSNT_01380___ 1 ATGTATCTGTCCATTGTGAAAGAGGATAACTGGTTTGGATATGT----AT 46
|||.|..||...|||.|| |..||..|||||.||| ||| ||
BL03900 1 ATGGAATTGCGGATTATG--ACCGGCAAACTGATTT-----TGTTGGGAT 43
BSNT_01380___ 47 TTATAGCAGCAGGTGCTGCCATGTATGCAGCCAAT-CATGTTTTGCTGAC 95
|||| |||.||| |||| |.| ||||.|.|
BL03900 44 TTAT---------------CATCTAT-----CAATGCGT-TTTTTCGG-- 70
BSNT_01380___ 96 AAAAGAGACAAATGCCATCTG-----------GTTCTGCCTGATTG---- 130
||||.|||| ||||| ||||.||||..|||
BL03900 71 -AAAGTGACA------ATCTGCCGTGGCTTGTGTTCAGCCTTCTTGTTTA 113
BSNT_01380___ 131 -----ATATTGCAA--TCGGCTTTTCGTTCGGATTTATCTTTCCCGGCAC 173
.||| ||| ||||..||.||.| ||||.|| |.
BL03900 114 CGTCTGTAT--CAACCTCGGGATTGCGAT----TTTACCT--------AA 149
BSNT_01380___ 174 AGG--------------TTTGTTCATTATTATGCTT--TGTC--CGGTTG 205
||| ||| |||||||..|| |||| | .||.
BL03900 150 AGGAAAAACAAAAAAGCTTT-----TTATTATCATTTCTGTCATC-ATTT 193
BSNT_01380___ 206 CGGTCGCCTTTTTTCTGCGGGGGT-----------------------TTC 232
|..||| |||.||.|||.|..|| |||
BL03900 194 CAATCG--TTTCTTATGCAGAAGTGCACCCCCTATTTATTTTATTCCTTC 241
BSNT_01380___ 233 C------------TAAAAGAACAGC-----ATGGTCTGTCTTATGT---- 261
| |.||.||.|||| .|||.||| |..|.||
BL03900 242 CTTTTACCCTGTGTGAAGGAGCAGCCGATTTTGGGCTG-CCGAAGTGGGC 290
BSNT_01380___ 262 ----CTTTGCTCTATTTTATTTTTGATCGTTCTCATCCGTACATATGCGA 307
|||..|.| ||..|||||||...|| .
BL03900 291 GGTACTTGCCGC---------TTCAATCGTTCCGGTC------------T 319
BSNT_01380___ 308 TGTTCGGCAATGAATTTGTCATTGATCATTT-----GACTA-GC-ATGAC 350
||||...||||||| |.|||.| |.||| || .||||
BL03900 320 TGTTTATCAATGAA----------AGCATCTCAGCGGTCTACGCGTTGAC 359
BSNT_01380___ 351 ATTCG-TTGTC---TTTTGC-GGAGTCGTCGGCAAATTAATCCGCAAGCT 395
...|| ||.|| |||||| |.|.|.|.|||||| ||.| |
BL03900 360 GGCCGCTTTTCAATTTTTGCTGTACTGGGCGGCAA--------GCCA--T 399
BSNT_01380___ 396 GTTGGATGCGCAGGATACGGCAA------AACAGCAGTTTCAGGAACTGA 439
|.||.| |||| |||| .|.|| ||||.||..|| ||.|..|
BL03900 400 GATGCA-GCGC-GGAT--TGAAAAGCTTGAACATCATATT---GATCAAA 442
BSNT_01380___ 440 CG----GAGTCC--CATCTGGCGCTGTC-----TGCTGC------ACATC 472
|| |||.|| || |..||||.| |||||| |||
BL03900 443 CGAGAAGAGACCTGCA---GAAGCTGACAAACATGCTGCGTGAAAACA-- 487
BSNT_01380___ 473 AGGAGCTCCATTTAT------ATGCGAAGCAGGT----TGAAGAGCTGAC 512
|.||| ||||| ||.|||| | |.|..|||
BL03900 488 AAGAG-----TTTATCAGACAATCCGAA-----TATACTTATAAGC---- 523
BSNT_01380___ 513 TGCCATTTACGAGCGGAACAGAATGGCGCGGGAAATCCATGATACAGTGG 562
||.|.|||||.|||.|..|..|.|.||||||.||.||||.|.|.|
BL03900 524 -----TTGAGGAGCGCAACCGGCTTTCCCAGGAAATACACGATAAAATCG 568
BSNT_01380___ 563 GGCATAAAATGAC---GGCCCT------TCTCGTCCAGCTGC--AGCTTT 601
|.|||...||||| .||.|| .|||| .|||.|| |||
BL03900 569 GTCATTCCATGACAGGAGCGCTGATTCAGCTCG--AAGCGGCGAAGC--- 613
BSNT_01380___ 602 TGCGTGAATGGCA---------AAAAAG----AGA----CAGCAAAA--- 631
||||...||.|| |||||| ||| |.||||||
BL03900 614 -GCGTCCTTGACATAGACAAGGAAAAAGCTTCAGAGCTCCTGCAAAATGC 662
BSNT_01380___ 632 -------------AAG---CGGAT--GAGACAGTAG-GTGTCTGTGAAAC 662
||| .|||| .|.|.|.||| .||.| ||.|||.
BL03900 663 GATTAACATCTCCAAGGACGGGATCGAAAATATTAGATTGAC-GTTAAAA 711
BSNT_01380___ 663 ACTTGCCCGTGAAG-CGCTTGATGATGTCCGCTTATCAGTAC------GC 705
| .|||.||| ||| || ||||.|| ||
BL03900 712 A-----GCGTCAAGCCGC----------CC-----TCAGAACAGATGGGC 741
BSNT_01380___ 706 ACTCTGCAAACTGA-------AAACGATCCTTCGCTAATCGAAT------ 742
| ||..||.|.||| .|.|||| ||||
BL03900 742 A-TCCACAGATTGAGGCTGTTTATCGAT------------GAATGTTCGG 778
BSNT_01380___ 743 CGCTGAAACAGCTGA------CAGAGGACTTTTGCAAAAATGCAGGAGTC 786
|||.|.|.||..||| | |.|||||||.|||.||
BL03900 779 CGCAGTACCATATGAATATTTC-----ATTTTTGCATAAAGGC------- 816
BSNT_01380___ 787 ACAACAGAATTTG------------CGG--TCAACGG-----TGATCCTG 817
.||||| |.| ||||.|| |..|..||
BL03900 817 -------GATTTGGATGTTATTTCTCAGATTCAATGGAAGATTATTTTTG 859
BSNT_01380___ 818 CAATCATCCCGCTGTCTCTCCATCCGACCCTGATCAGAACGGTGCAGGAA 867
.||.|||| ||| |||
BL03900 860 AAAACATC------------------ACC------------------GAA 873
BSNT_01380___ 868 GCACTGACCAATGCCAAACGGCACGGCG------------GCGCCGCAGC 905
||.|||||.|| |.|||.| |||.|.||
BL03900 874 GCGCTGACAAA----------CTCGGTGAAATATGCTGAAGCGACACA-- 911
BSNT_01380___ 906 TTGTTCGATACAGCT-------TGCCTGCACAACGGACAGCATCAGCCTT 948
||| ||.||.|| || || |.|.||..||
BL03900 912 -TGT---ATCCATCTGTATTCATG--TG---------CTGAATACGC--- 943
BSNT_01380___ 949 GTCATTAAGGATGACGGCAAAGGCAATCCCGA----GGCAGCACTTGGAT 994
|||||||.|..||.|..||||.||| |.|| |||.|||
BL03900 944 -TCATTAAAGCCGAAGTGAAAGACAA--CGGAAAAGGGCGGCA------- 983
BSNT_01380___ 995 TTGGTCTCTTGAATATGAA-AAAGCGGGCAGCGGAAC------ATGGCGG 1037
|||.||.|| ||| |||..|.|||.| ||||.||
BL03900 984 ----------GAAAATCAAGAAA--GGGATGGGGATCATCGGGATGGAGG 1021
BSNT_01380___ 1038 AACGATCCGCTT---TGAAAGCGAACGG-GATCAAGGATTTACTGT---A 1080
||||..|||||| |.||.| |||.|| |||| .||.||.|| |
BL03900 1022 AACGGGCCGCTTCTGTTAACG-GAAAGGTGATC----GTTGACGGTTCAA 1066
BSNT_01380___ 1081 AATGCAGAATTTTCACTCGCCAATAAAAAATGGAGCTTCGGGCCCGTGCA 1130
|..|| ||.||..||.||| ||.|||.
BL03900 1067 ACGGC----TTCTCTGTCACCA---------------------CCCTGCT 1091
BSNT_01380___ 1131 GCAAAAGGAGAGTTTATCATGA---- 1152
||..||| |||||
BL03900 1092 GCCCAAG----------CATGAATGA 1107
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