Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01381 and BL03899
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:54
# Commandline: needle
# -asequence dna-align/BSNT_01381___yfiK.1.5803.seq
# -bsequence dna-align/BL03899___yfiK.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01381___yfiK-BL03899___yfiK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01381___yfiK-BL03899___yfiK.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01381___yfiK
# 2: BL03899___yfiK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 801
# Identity: 390/801 (48.7%)
# Similarity: 390/801 (48.7%)
# Gaps: 300/801 (37.5%)
# Score: 738.5
#
#
#=======================================
BSNT_01381___ 1 ATG---ATTAAGATCATCATTACCGACGA----TCAGGATATCGTCAGAG 43
||| |||||..|.||||||.|.||.|| ||| .||.|.||||
BL03899___yfi 1 ATGAAAATTAAAGTGATCATTGCGGATGACAATTCA----TTCATAAGAG 46
BSNT_01381___ 44 AAGGGCTGG-----CATCCCTGCTCCAGCTCCGA-GAAGAGCTCGATGTG 87
|||||..| ||| .|..|||.|..| ||.||..|.||.|||
BL03899___yfi 47 -AGGGCATGAAAATCAT-----ATTGAGCACTTATGATGAATTTGAAGTG 90
BSNT_01381___ 88 ATCGCAACGGCGCGAAACGGACAGGAAGCCTT-----CGAAAAGGCGAA- 131
.|.||.||||.| .||||.|.||| || |.||||
BL03899___yfi 91 CTGGCGACGGTG---------GAGGATGGCTTGCAGGCG----GTCGAAT 127
BSNT_01381___ 132 ------------AGAGCTGGAGCCGGATATCGTG------TTAATGGACA 163
| ||||| .|||||| || ||.|||
BL03899___yfi 128 TTTGCCGCGCCCA-AGCTG----TGGATAT--TGCACTCCTTGATG---- 166
BSNT_01381___ 164 TCCGCATGCCGGTTTCCAAC-GGGGTGGAG-GGAACAAAATTAATCACAA 211
||||||||| ||||| .||.||||| || ||
BL03899___yfi 167 TCCGCATGC------CCAACATGGATGGAGTGG---------------AA 195
BSNT_01381___ 212 GCT-CGCTGC------------CCGGCGTAAAGGTTTTGATGCTGACAAC 248
||| |||.|| |.||||..|||..|||.||..|.|||||
BL03899___yfi 196 GCTGCGCGGCTCATTTCAGAAACGGGCGCCAAGCCTTTTATCTTAACAAC 245
BSNT_01381___ 249 CTTT-------AAGGATTCAGAGCTGATTGCT--GAAGCGCTTGAAGAA- 288
.||| |.|.||.|| |..|.||| ||..|| |||
BL03899___yfi 246 GTTTGATGACGACGAATACA----TCGTCGCTGCGATACG------GAAC 285
BSNT_01381___ 289 GGAGCAAGCGGGTACCTGCTGAAGGATATGTCG-------GC-------A 324
||.||||..||.||..||||||| |.|||.|| || |
BL03899___yfi 286 GGCGCAAAAGGCTATTTGCTGAA--AAATGCCGAACCCGAGCGAATCAGA 333
BSNT_01381___ 325 GATACGATTGTAAAAGCGGTGATGACTGTTC---------ATTCTG--GC 363
||..|||| ||||||.| ||||| |||.|| ||
BL03899___yfi 334 GACGCGAT--TAAAAGTG--------TGTTCAACGGCCATATTGTGATGC 373
BSNT_01381___ 364 -GGA-ATGGTGCTTCCGCCGGA----ATTGACTGCCCAAAT--GCTGA-- 403
||| || |.|||.| || |||.| |.||||.| ||.||
BL03899___yfi 374 AGGATAT----CATCCTC--GACAAGATTAA--GTCCAATTTGGCGGAGC 415
BSNT_01381___ 404 ATGAATGGAAGCGTGAAAAACAGCTGAAAGGAA--TAAATGAGATAGAAA 451
||.|| ||||| |||| || |||||||
BL03899___yfi 416 ATAAA--GAAGC-----------------GGAACCTA----AGATAGA-- 440
BSNT_01381___ 452 AACCTAAGGAGCTGCTCGA---CCTG---ACAGAGCGCGAAATCGAAGTT 495
||| |||| ||.||.|||||..|||...||
BL03899___yfi 441 ----------------CGAAAGCCTGTTTACCGAACGCGAGCTCGGGATT 474
BSNT_01381___ 496 CTG--GCTGA--GCTTGGGTACGGGCTGAATAACAAAGAAATTGCCGAA- 540
.|| ||||| ||..| .||||||...||.||||||||| .||||
BL03899___yfi 475 ATGGCGCTGATCGCCAG----AGGGCTGTCCAATAAAGAAATT-TCGAAG 519
BSNT_01381___ 541 AAGCTTTACATTACAGAAGGCACAGTCAAAAACCACGTTT--CAA--ATA 586
.||||.|..||..|.||||| .|||.|| ||| |||
BL03899___yfi 520 GAGCTGTTTATCTCTGAAGG-------------TACGATTGCCAATTATA 556
BSNT_01381___ 587 TTATCAGCAAGCTGGCTGT---------CAGGG-----ACA--GAACCCA 620
|| || ||.|.|.| ||||| ||| |.||.||
BL03899___yfi 557 TT-TC------CTCGATTTTGGGGAAAACAGGGCTTGAACATCGGACGCA 599
BSNT_01381___ 621 AGCCGCCATTTACT-------CGGT-CAGATATGGTGTATCTGTCTTTTG 662
|...||.|||||.| |||| .||.|| .|||||.
BL03899___yfi 600 AATTGCGATTTATTATTTAACCGGTAAAGTTA-----------ACTTTTA 638
BSNT_01381___ 663 A 663
|
BL03899___yfi 639 A 639
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