Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05806 and BL03898
See
Amino acid alignment /
Visit
BSNT_05806 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:52
# Commandline: needle
# -asequence dna-align/BSNT_05806___ywdK.1.5803.seq
# -bsequence dna-align/BL03898___ywdK.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05806___ywdK-BL03898___ywdK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05806___ywdK-BL03898___ywdK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05806___ywdK
# 2: BL03898___ywdK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 377
# Identity: 270/377 (71.6%)
# Similarity: 270/377 (71.6%)
# Gaps: 10/377 ( 2.7%)
# Score: 928.5
#
#
#=======================================
BSNT_05806___ 1 ATGAAAGTTTTTATCATATTAGGGGCTATTAACGCCCTGCTTGCCGTGGG 50
.|||||.|.|||.|.||.|||||.|||.|.||.||..|||||||.||.|.
BL03898___ywd 1 GTGAAATTATTTTTGATTTTAGGTGCTGTCAATGCTATGCTTGCGGTTGC 50
BSNT_05806___ 51 ACTCGGAGCATTCGGCGCTCACGGATTAGAAGGGAAAATACCTGATAAAT 100
..|.|||||.|||||.||.||.||..|.|||||||||||.||.||.||||
BL03898___ywd 51 TTTAGGAGCGTTCGGAGCCCATGGTCTTGAAGGGAAAATTCCCGAGAAAT 100
BSNT_05806___ 101 ATCTTCAGGTTTGGCACACAGGCGTGCAGTATCATATGTATCACGCCCTT 150
||.|.||..|.|||||.||.|||||.|||||||||||||||||.||.||.
BL03898___ywd 101 ATTTGCAAATCTGGCAGACCGGCGTCCAGTATCATATGTATCATGCGCTC 150
BSNT_05806___ 151 GGGTTATTCGTTGTCGCGTTTCTGGC-TGATAAATTATCCGGCA----TA 195
||.|||.|.|..||||||.|..|.|| |.|.|| |.|||| ..
BL03898___ywd 151 GGTTTAATTGCCGTCGCGCTCATCGCGTCAAAA-----CTGGCAGGTGCG 195
BSNT_05806___ 196 GGCAGTGTCACGACAGCCGGCTGGCTGATGTTTGCGGGAATTGTGCTGTT 245
||.||.||..|..|.||.||.||||||||||||||.|||||.||..|.||
BL03898___ywd 196 GGAAGCGTTTCTGCGGCAGGGTGGCTGATGTTTGCCGGAATCGTTTTATT 245
BSNT_05806___ 246 TTCCGGAAGCTTATATATTCTAAGTGTGACGCAAATCTCCATTCTTGGAG 295
|||.|||||.||||||.|.||.||..|.|||||||||..|.|.||.||.|
BL03898___ywd 246 TTCTGGAAGTTTATATGTCCTCAGCCTTACGCAAATCAGCGTCCTCGGTG 295
BSNT_05806___ 296 CGATCACCCCGCTCGGCGGTGTGGCGTTTATTATTTCTTGGATTATGATC 345
||||.||.|||||.|||||.||||||||||||....|.|||||.|||.||
BL03898___ywd 296 CGATTACTCCGCTGGGCGGCGTGGCGTTTATTGCCGCATGGATCATGGTC 345
BSNT_05806___ 346 GTTGTCGCAGCCGTCAAATATCTATAA 372
||||||.||||.|||||||||.|.||.
BL03898___ywd 346 GTTGTCTCAGCGGTCAAATATTTGTAG 372
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.