Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05807 and BL03897

See Amino acid alignment / Visit BSNT_05807 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:52
# Commandline: needle
#    -asequence dna-align/BSNT_05807___ywdJ.1.5803.seq
#    -bsequence dna-align/BL03897___ywdJ.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05807___ywdJ-BL03897___ywdJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05807___ywdJ-BL03897___ywdJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05807___ywdJ
# 2: BL03897___ywdJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1393
# Identity:     911/1393 (65.4%)
# Similarity:   911/1393 (65.4%)
# Gaps:         161/1393 (11.6%)
# Score: 2858.0
# 
#
#=======================================

BSNT_05807___      1 GTGAAATTGGTTCTTGGCGCGCTGCAATGGACAGCGTTTATCATTGCTGC     50
                     .|||||.||.||.||||.||..|.||||||||.||.|||||.|||||..|
BL03897___ywd      1 TTGAAACTGCTTTTTGGGGCTTTACAATGGACGGCATTTATTATTGCGTC     50

BSNT_05807___     51 GGCGATAGTTGTTCCGGTGGCGGTTGCCCAGTCGTTTCATCTGGATCACT    100
                     .||.||.||.||.||..|.||..|.|..|||||.||....|||.|.||..
BL03897___ywd     51 CGCAATCGTGGTGCCCATTGCAATCGGGCAGTCATTCGGGCTGAACCAGG    100

BSNT_05807___    101 CAGATTCTGCAAGATTGATTCAAAGCACTTTTTTTGTACTGGGAATTGCC    150
                     .|||..|.||..|.|||.||||||||||||||||.||.||.||.|...|.
BL03897___ywd    101 GAGAGACCGCGGGGTTGGTTCAAAGCACTTTTTTCGTGCTCGGCACAACG    150

BSNT_05807___    151 GCCGTCATTCAGTGTTTGAAAGGCCACAGACTGCCGATTAATGAAAGCCC    200
                     ||..|.||.||.|||||....||.|||.|.||||||||||||||.||.||
BL03897___ywd    151 GCTTTTATCCAATGTTTATTGGGACACCGCCTGCCGATTAATGAGAGTCC    200

BSNT_05807___    201 AGCCGGCTTGTGGTGGGGAGTGTATACGATTTACGCAGGGCTGACGGGAA    250
                     .||.|||.|.||||||||.||.||.||||||||.||.||.||.||.||.|
BL03897___ywd    201 GGCTGGCCTCTGGTGGGGCGTCTACACGATTTATGCCGGTCTTACAGGGA    250

BSNT_05807___    251 CTGTGTTTGCGA--CATATGGAGACACACTGCGGGGTTTGCAGGGAGCTC    298
                     |.||.||.||||  ||.||  .||.||.||.|.|||..||||||||||..
BL03897___ywd    251 CCGTATTCGCGACTCACAT--CGAAACGCTCCAGGGGCTGCAGGGAGCGA    298

BSNT_05807___    299 TTCTTGTAAGCGCTGTATGTTTCTTTTTGTTAAGTGTTTTCAAGGTCATT    348
                     |.||..|||||||.||.|..||||||.|.||.|||.|.||.||.||||||
BL03897___ywd    299 TGCTGCTAAGCGCGGTTTTCTTCTTTATTTTTAGTTTATTTAAAGTCATT    348

BSNT_05807___    349 GACAGACTTGCAAAAT----TGTTTACTCCGGTTGTAACGGGCGTCTATT    394
                     ||.|..||.||    |    ||||||||||.|||||.||.|||.|.||||
BL03897___ywd    349 GATAAGCTGGC----TGTGATGTTTACTCCTGTTGTGACAGGCATTTATT    394

BSNT_05807___    395 TATTGCTTCTTGTCATGCAGCTGAGTCAGCCCATTATAAAAGGAATTCTC    444
                     ||.||||.||.|||||.|||||.||..|.||.||..|.|||||..|..|.
BL03897___ywd    395 TACTGCTGCTGGTCATCCAGCTTAGCGATCCGATCGTTAAAGGTGTCATG    444

BSNT_05807___    445 GGAATCGGTTATCGACAGGACGGGGTGGA------CGGTCTTGTATTTGG    488
                     ||.|||||.||.||..|..|||.|||.||      ||    |||.|||| 
BL03897___ywd    445 GGGATCGGCTACCGGAAAAACGAGGTCGATATACCCG----TGTTTTTG-    489

BSNT_05807___    489 CCTGGCGCTTGTTGTGAT--CGCTGCCGCT---TTTATAATGA------C    527
                      ||||||   ||||||||  .||||  |||   |||.|.||||      |
BL03897___ywd    490 -CTGGCG---GTTGTGATTATGCTG--GCTACGTTTCTGATGAGCCGGTC    533

BSNT_05807___    528 AAA---TTCGAACATCATGTTTTTTAAGCAATATTCTATTTTATTCGC-C    573
                     |||   |.|||         ||.|.|||||||||||.||||||.|.|| |
BL03897___ywd    534 AAACGTTCCGA---------TTCTCAAGCAATATTCAATTTTAATTGCGC    574

BSNT_05807___    574 TTGTTCGGCGGGTGGGTGCTGTTTGCGGCTGCCGGAGCGGCAAAG----C    619
                     || ||||||||.|||.|..|.|||||.|....|||.|.|||.|||    |
BL03897___ywd    575 TT-TTCGGCGGCTGGATCTTATTTGCCGTATTCGGCGTGGCGAAGGCGCC    623

BSNT_05807___    620 CGATTGAAATGC---CGGACCGGCTGTTTCAGCTGCCTTCC----CTGTT    662
                     |||       ||   ||.|||.||||||.||    ||||||    .|.||
BL03897___ywd    624 CGA-------GCGTGCGAACCAGCTGTTCCA----CCTTCCGGATATTTT    662

BSNT_05807___    663 TCCTTTTGGGACACCGTTATTTAACAGCGGCCTGATCATCACTTCTATTT    712
                     ||||||.||.|..|||.|.|||.|||||||.|||.|..|.|||||..|.|
BL03897___ywd    663 TCCTTTCGGCATGCCGATGTTTGACAGCGGGCTGGTTGTTACTTCGTTGT    712

BSNT_05807___    713 TTATTACCATCTTGCTGATTGTGAATATGCTGGCGAGCATGAAGGTTGTG    762
                     |.|||||..|.|||.|.||.||.||||||||.||.|||||...|||.|| 
BL03897___ywd    713 TCATTACAGTTTTGTTAATCGTCAATATGCTCGCAAGCATACGGGTGGT-    761

BSNT_05807___    763 GACATCGCCGTGAAAAAATTCAG-CAAACAGCCTGA-----TGGAA-AGC    805
                               ||||..|  .||| |||||||..|||     ||||| || 
BL03897___ywd    762 ----------TGAAGGA--GCAGTCAAACAGTTTGAGAAGCTGGAAGAG-    798

BSNT_05807___    806 ATCATGAA-------CGCCATGCCGGTTTTGCCGCTTCATTCAGCCATCT    848
                        |.|||       ||.|..|||||.|||..|||.||..||||||||.|
BL03897___ywd    799 ---AGGAAGCGGGCCCGTCCGGCCGGGTTTATCGCCTCTGTCAGCCATTT    845

BSNT_05807___    849 GCTTAGCGGTTTGACGGGAGCTATTGCGCCTGTTCCGATTTCGGGAGCCG    898
                     |||.|||||..||...||||||.|.|.|.|.||.|||||.||.|||||.|
BL03897___ywd    846 GCTGAGCGGACTGCTCGGAGCTGTAGGGACCGTGCCGATATCCGGAGCTG    895

BSNT_05807___    899 CGGGTTTTATTGAAACGACCAAAATGCCTTCTAAAAAACCGTTTATGCTC    948
                     |.||.||||||.|||||||.|..|||.||||.||||||||||||.|||||
BL03897___ywd    896 CAGGGTTTATTCAAACGACGAGGATGTCTTCCAAAAAACCGTTTTTGCTC    945

BSNT_05807___    949 GGCAGTATTTTGGTTATCGTGATCAGCGTAATCCCGTTTTTTATGAATAC    998
                     ||.|||.|..|.||.|||||.||||||.|..|||||.|..|.||||||||
BL03897___ywd    946 GGGAGTCTGATCGTAATCGTCATCAGCTTCTTCCCGCTGGTCATGAATAC    995

BSNT_05807___    999 GTTTGCGAGCCTGCCGTCACCCGTTGGATTTGCGGTGAATTTTGTTGTGT   1048
                     .|||||.|||||||||||.||.||.||.|||||||||||.||.||.||||
BL03897___ywd    996 TTTTGCCAGCCTGCCGTCTCCGGTCGGTTTTGCGGTGAACTTCGTCGTGT   1045

BSNT_05807___   1049 TCTCCGCAATGGGCGGTCTGGCCTTTGCCGAATTTGATTCATATGAGAAA   1098
                     |.||..|.||||.|||.|||||.|||||||||||.|||||.||||     
BL03897___ywd   1046 TTTCAACGATGGTCGGCCTGGCATTTGCCGAATTCGATTCTTATG-----   1090

BSNT_05807___   1099 GAAGAATCAAAAAGGGTGAGG--------------TCTATCATCGGCATC   1134
                              ||||||..||||              |.|.|.|.|||.||.
BL03897___ywd   1091 ---------AAAAGGACGAGGCCGGCCGCATCCGCTTTGTTACCGGGATT   1131

BSNT_05807___   1135 TCACTGCTGACAGGGGTCGGTATCATGTTTGTTCCTGAAACTGCGTT-AA   1183
                     .|.||.||..|.||.||.||..|.||||||||.|||||.|.|||.|| .|
BL03897___ywd   1132 GCGCTCCTTGCCGGTGTGGGGGTTATGTTTGTACCTGAGAGTGCTTTGGA   1181

BSNT_05807___   1184 AGGGATTGCATCCGGTATTTATTTCTCTATTAAGCAACGGGCTCGTATTA   1233
                     ||||| |||||||.||.|||.||||..|.||||||||.|||||.||..|.
BL03897___ywd   1182 AGGGA-TGCATCCTGTTTTTGTTTCCATTTTAAGCAATGGGCTTGTCCTT   1230

BSNT_05807___   1234 GGGACGCTTGCTGCAATAGCTGCTGACCAGTTCCAGCTTTGGCGCAGGAG   1283
                     ||.||..|.|..||.||.|||||.||.||..|.||||||      ||||.
BL03897___ywd   1231 GGAACAATCGTAGCGATTGCTGCGGAACAAATACAGCTT------AGGAA   1274

BSNT_05807___   1284 A---AAATCCGACAATCTCGTGTCAACGGAGAACAAACATTGA   1323
                     |   ||||..||||||.||||||||               |||
BL03897___ywd   1275 AAAGAAATATGACAATATCGTGTCA---------------TGA   1302


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