Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05807 and BL03897
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:52
# Commandline: needle
# -asequence dna-align/BSNT_05807___ywdJ.1.5803.seq
# -bsequence dna-align/BL03897___ywdJ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05807___ywdJ-BL03897___ywdJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05807___ywdJ-BL03897___ywdJ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05807___ywdJ
# 2: BL03897___ywdJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1393
# Identity: 911/1393 (65.4%)
# Similarity: 911/1393 (65.4%)
# Gaps: 161/1393 (11.6%)
# Score: 2858.0
#
#
#=======================================
BSNT_05807___ 1 GTGAAATTGGTTCTTGGCGCGCTGCAATGGACAGCGTTTATCATTGCTGC 50
.|||||.||.||.||||.||..|.||||||||.||.|||||.|||||..|
BL03897___ywd 1 TTGAAACTGCTTTTTGGGGCTTTACAATGGACGGCATTTATTATTGCGTC 50
BSNT_05807___ 51 GGCGATAGTTGTTCCGGTGGCGGTTGCCCAGTCGTTTCATCTGGATCACT 100
.||.||.||.||.||..|.||..|.|..|||||.||....|||.|.||..
BL03897___ywd 51 CGCAATCGTGGTGCCCATTGCAATCGGGCAGTCATTCGGGCTGAACCAGG 100
BSNT_05807___ 101 CAGATTCTGCAAGATTGATTCAAAGCACTTTTTTTGTACTGGGAATTGCC 150
.|||..|.||..|.|||.||||||||||||||||.||.||.||.|...|.
BL03897___ywd 101 GAGAGACCGCGGGGTTGGTTCAAAGCACTTTTTTCGTGCTCGGCACAACG 150
BSNT_05807___ 151 GCCGTCATTCAGTGTTTGAAAGGCCACAGACTGCCGATTAATGAAAGCCC 200
||..|.||.||.|||||....||.|||.|.||||||||||||||.||.||
BL03897___ywd 151 GCTTTTATCCAATGTTTATTGGGACACCGCCTGCCGATTAATGAGAGTCC 200
BSNT_05807___ 201 AGCCGGCTTGTGGTGGGGAGTGTATACGATTTACGCAGGGCTGACGGGAA 250
.||.|||.|.||||||||.||.||.||||||||.||.||.||.||.||.|
BL03897___ywd 201 GGCTGGCCTCTGGTGGGGCGTCTACACGATTTATGCCGGTCTTACAGGGA 250
BSNT_05807___ 251 CTGTGTTTGCGA--CATATGGAGACACACTGCGGGGTTTGCAGGGAGCTC 298
|.||.||.|||| ||.|| .||.||.||.|.|||..||||||||||..
BL03897___ywd 251 CCGTATTCGCGACTCACAT--CGAAACGCTCCAGGGGCTGCAGGGAGCGA 298
BSNT_05807___ 299 TTCTTGTAAGCGCTGTATGTTTCTTTTTGTTAAGTGTTTTCAAGGTCATT 348
|.||..|||||||.||.|..||||||.|.||.|||.|.||.||.||||||
BL03897___ywd 299 TGCTGCTAAGCGCGGTTTTCTTCTTTATTTTTAGTTTATTTAAAGTCATT 348
BSNT_05807___ 349 GACAGACTTGCAAAAT----TGTTTACTCCGGTTGTAACGGGCGTCTATT 394
||.|..||.|| | ||||||||||.|||||.||.|||.|.||||
BL03897___ywd 349 GATAAGCTGGC----TGTGATGTTTACTCCTGTTGTGACAGGCATTTATT 394
BSNT_05807___ 395 TATTGCTTCTTGTCATGCAGCTGAGTCAGCCCATTATAAAAGGAATTCTC 444
||.||||.||.|||||.|||||.||..|.||.||..|.|||||..|..|.
BL03897___ywd 395 TACTGCTGCTGGTCATCCAGCTTAGCGATCCGATCGTTAAAGGTGTCATG 444
BSNT_05807___ 445 GGAATCGGTTATCGACAGGACGGGGTGGA------CGGTCTTGTATTTGG 488
||.|||||.||.||..|..|||.|||.|| || |||.||||
BL03897___ywd 445 GGGATCGGCTACCGGAAAAACGAGGTCGATATACCCG----TGTTTTTG- 489
BSNT_05807___ 489 CCTGGCGCTTGTTGTGAT--CGCTGCCGCT---TTTATAATGA------C 527
|||||| |||||||| .|||| ||| |||.|.|||| |
BL03897___ywd 490 -CTGGCG---GTTGTGATTATGCTG--GCTACGTTTCTGATGAGCCGGTC 533
BSNT_05807___ 528 AAA---TTCGAACATCATGTTTTTTAAGCAATATTCTATTTTATTCGC-C 573
||| |.||| ||.|.|||||||||||.||||||.|.|| |
BL03897___ywd 534 AAACGTTCCGA---------TTCTCAAGCAATATTCAATTTTAATTGCGC 574
BSNT_05807___ 574 TTGTTCGGCGGGTGGGTGCTGTTTGCGGCTGCCGGAGCGGCAAAG----C 619
|| ||||||||.|||.|..|.|||||.|....|||.|.|||.||| |
BL03897___ywd 575 TT-TTCGGCGGCTGGATCTTATTTGCCGTATTCGGCGTGGCGAAGGCGCC 623
BSNT_05807___ 620 CGATTGAAATGC---CGGACCGGCTGTTTCAGCTGCCTTCC----CTGTT 662
||| || ||.|||.||||||.|| |||||| .|.||
BL03897___ywd 624 CGA-------GCGTGCGAACCAGCTGTTCCA----CCTTCCGGATATTTT 662
BSNT_05807___ 663 TCCTTTTGGGACACCGTTATTTAACAGCGGCCTGATCATCACTTCTATTT 712
||||||.||.|..|||.|.|||.|||||||.|||.|..|.|||||..|.|
BL03897___ywd 663 TCCTTTCGGCATGCCGATGTTTGACAGCGGGCTGGTTGTTACTTCGTTGT 712
BSNT_05807___ 713 TTATTACCATCTTGCTGATTGTGAATATGCTGGCGAGCATGAAGGTTGTG 762
|.|||||..|.|||.|.||.||.||||||||.||.|||||...|||.||
BL03897___ywd 713 TCATTACAGTTTTGTTAATCGTCAATATGCTCGCAAGCATACGGGTGGT- 761
BSNT_05807___ 763 GACATCGCCGTGAAAAAATTCAG-CAAACAGCCTGA-----TGGAA-AGC 805
||||..| .||| |||||||..||| ||||| ||
BL03897___ywd 762 ----------TGAAGGA--GCAGTCAAACAGTTTGAGAAGCTGGAAGAG- 798
BSNT_05807___ 806 ATCATGAA-------CGCCATGCCGGTTTTGCCGCTTCATTCAGCCATCT 848
|.||| ||.|..|||||.|||..|||.||..||||||||.|
BL03897___ywd 799 ---AGGAAGCGGGCCCGTCCGGCCGGGTTTATCGCCTCTGTCAGCCATTT 845
BSNT_05807___ 849 GCTTAGCGGTTTGACGGGAGCTATTGCGCCTGTTCCGATTTCGGGAGCCG 898
|||.|||||..||...||||||.|.|.|.|.||.|||||.||.|||||.|
BL03897___ywd 846 GCTGAGCGGACTGCTCGGAGCTGTAGGGACCGTGCCGATATCCGGAGCTG 895
BSNT_05807___ 899 CGGGTTTTATTGAAACGACCAAAATGCCTTCTAAAAAACCGTTTATGCTC 948
|.||.||||||.|||||||.|..|||.||||.||||||||||||.|||||
BL03897___ywd 896 CAGGGTTTATTCAAACGACGAGGATGTCTTCCAAAAAACCGTTTTTGCTC 945
BSNT_05807___ 949 GGCAGTATTTTGGTTATCGTGATCAGCGTAATCCCGTTTTTTATGAATAC 998
||.|||.|..|.||.|||||.||||||.|..|||||.|..|.||||||||
BL03897___ywd 946 GGGAGTCTGATCGTAATCGTCATCAGCTTCTTCCCGCTGGTCATGAATAC 995
BSNT_05807___ 999 GTTTGCGAGCCTGCCGTCACCCGTTGGATTTGCGGTGAATTTTGTTGTGT 1048
.|||||.|||||||||||.||.||.||.|||||||||||.||.||.||||
BL03897___ywd 996 TTTTGCCAGCCTGCCGTCTCCGGTCGGTTTTGCGGTGAACTTCGTCGTGT 1045
BSNT_05807___ 1049 TCTCCGCAATGGGCGGTCTGGCCTTTGCCGAATTTGATTCATATGAGAAA 1098
|.||..|.||||.|||.|||||.|||||||||||.|||||.||||
BL03897___ywd 1046 TTTCAACGATGGTCGGCCTGGCATTTGCCGAATTCGATTCTTATG----- 1090
BSNT_05807___ 1099 GAAGAATCAAAAAGGGTGAGG--------------TCTATCATCGGCATC 1134
||||||..|||| |.|.|.|.|||.||.
BL03897___ywd 1091 ---------AAAAGGACGAGGCCGGCCGCATCCGCTTTGTTACCGGGATT 1131
BSNT_05807___ 1135 TCACTGCTGACAGGGGTCGGTATCATGTTTGTTCCTGAAACTGCGTT-AA 1183
.|.||.||..|.||.||.||..|.||||||||.|||||.|.|||.|| .|
BL03897___ywd 1132 GCGCTCCTTGCCGGTGTGGGGGTTATGTTTGTACCTGAGAGTGCTTTGGA 1181
BSNT_05807___ 1184 AGGGATTGCATCCGGTATTTATTTCTCTATTAAGCAACGGGCTCGTATTA 1233
||||| |||||||.||.|||.||||..|.||||||||.|||||.||..|.
BL03897___ywd 1182 AGGGA-TGCATCCTGTTTTTGTTTCCATTTTAAGCAATGGGCTTGTCCTT 1230
BSNT_05807___ 1234 GGGACGCTTGCTGCAATAGCTGCTGACCAGTTCCAGCTTTGGCGCAGGAG 1283
||.||..|.|..||.||.|||||.||.||..|.|||||| ||||.
BL03897___ywd 1231 GGAACAATCGTAGCGATTGCTGCGGAACAAATACAGCTT------AGGAA 1274
BSNT_05807___ 1284 A---AAATCCGACAATCTCGTGTCAACGGAGAACAAACATTGA 1323
| ||||..||||||.|||||||| |||
BL03897___ywd 1275 AAAGAAATATGACAATATCGTGTCA---------------TGA 1302
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