Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05809 and BL03896
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:53
# Commandline: needle
# -asequence dna-align/BSNT_05809___ywdI.1.5803.seq
# -bsequence dna-align/BL03896___ywdI.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05809___ywdI-BL03896___ywdI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05809___ywdI-BL03896___ywdI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05809___ywdI
# 2: BL03896___ywdI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 353
# Identity: 218/353 (61.8%)
# Similarity: 218/353 (61.8%)
# Gaps: 79/353 (22.4%)
# Score: 665.0
#
#
#=======================================
BSNT_05809___ 1 ATGAACATTCATATATC-----TGCATTAATTCAAAAGATGGAAGAGGAG 45
||||||||.|||||||| ||| |.|||||||||||.||.||.
BL03896___ywd 1 ATGAACATACATATATCAAGTTTGC-----TGCAAAAGATGGAGGACGAA 45
BSNT_05809___ 46 CTGAAAAAAGCAAAAACAGCTGAACGGGATG-----AGGAGCTGAAGCG- 89
.||||||||||||| ||.||| |||| ||.||
BL03896___ywd 46 TTGAAAAAAGCAAA-----------GGAATGCCACCAGGA----AAACGA 80
BSNT_05809___ 90 -TT----ATG----TAGCGGTTGTCCGTTCTCTGTGTGATGTCGTGCTTG 130
|| ||| |.|||||..||||.||.||.||.||.|||.|..|.|
BL03896___ywd 81 ATTGAAAATGCACATCGCGGTGATCCGCTCCCTTTGCGACGTCATTGTGG 130
BSNT_05809___ 131 ATCAGCCGGAGAACGTGAGCGCGCC--CCGCATACAGCCGAGCGTTACGC 178
|.|.||.|.|| |.||| ||| |.|||.| |.|||
BL03896___ywd 131 AACCGCAGCAG---------GGGCCGTCCG--TCCAGTC------TTCGC 163
BSNT_05809___ 179 C--AAGTCCCGCCGCGCC-----GCCATCGACAGACCAGCTGATGATGGA 221
| |.||.|...|| ||| .|||||||..||.|||||||||.|.||
BL03896___ywd 164 CTTATGTTCAAACG-GCCAATAAACCATCGAGCGATCAGCTGATGCTCGA 212
BSNT_05809___ 222 AAAAATGATGGGGAGCGCGGG------ATTAAACAAATTTCGAAAGCAAG 265
||||||||||||||||||.|| |..|.|||| |||.||||
BL03896___ywd 213 AAAAATGATGGGGAGCGCCGGTGCTGAACAATACAA------AAAACAAG 256
BSNT_05809___ 266 AAAAAGAGAAGCAGGAAGAGGATGGAAACGGAGAGTCTTTATTTGATTTT 315
|.|||.|.|||||.|||||.||.||.||||||||.|||.|.||||||||.
BL03896___ywd 257 AGAAACAAAAGCATGAAGATGACGGCAACGGAGATTCTATTTTTGATTTC 306
BSNT_05809___ 316 TAA 318
||.
BL03896___ywd 307 TAG 309
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