Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05817 and BL03892
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:53
# Commandline: needle
# -asequence dna-align/BSNT_05817___sacA.1.5803.seq
# -bsequence dna-align/BL03892___sacA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05817___sacA-BL03892___sacA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05817___sacA-BL03892___sacA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05817___sacA
# 2: BL03892___sacA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1573
# Identity: 996/1573 (63.3%)
# Similarity: 996/1573 (63.3%)
# Gaps: 269/1573 (17.1%)
# Score: 2901.0
#
#
#=======================================
BSNT_05817___ 1 ATGACAGCA-CATGATCAGGAGCTTCGTC------------GCCGGGCTT 37
|||| | ||.|||||||||||||||| .|||||
BL03892___sac 1 ATGA----ATCAAGATCAGGAGCTTCGTCAAAAGGCAATGAACCGGG--- 43
BSNT_05817___ 38 ATGAAGAAGT----GGA----GAAAAAAGAGCCCATCGCTGACAGCGATC 79
.||||||| | ||| |.||| ||.| ||||
BL03892___sac 44 TTGAAGAA-TACCGGGATATTGTAAA------CCTT----------GATC 76
BSNT_05817___ 80 CGCACCGCCAGCATTTTCATATCATGCCGCCGGTTGGGCTGCTGAATGAC 129
|..|.||.|.|||||.||||||||||||.||.||.||.|||||||||||.
BL03892___sac 77 CCTATCGGCTGCATTATCATATCATGCCTCCTGTCGGACTGCTGAATGAT 126
BSNT_05817___ 130 CCGAATGGCCTGATTTATTGG-AAGGGCAGCTATCATGTATTCTTTCAGT 178
|||||.||..|.|||.|.||| |||||..| ||.|||.|.||.|.|||||
BL03892___sac 127 CCGAACGGGTTCATTCAGTGGAAAGGGGTG-TACCATCTTTTTTATCAGT 175
BSNT_05817___ 179 GGCAGCCGTTTCAGACGGGGCACGGCGCAAAATTTTGGGGGCATTATACG 228
||..|||.|||.|.|||||||||||.|||||.||.|||||.|| .|||.
BL03892___sac 176 GGATGCCTTTTAAAACGGGGCACGGTGCAAAGTTATGGGGACA--CTACT 223
BSNT_05817___ 229 ACACAG--GATGTTGTGAATTGGAAGCGGGAAGAGATTGCGCTGGCTCCG 276
.|.||| |||.|.||.||.|||..||..||||||||.||.||..|.|||
BL03892___sac 224 CCTCAGCAGATCTGGTTAACTGGCGGCATGAAGAGATCGCCCTCACGCCG 273
BSNT_05817___ 277 AGTGATTGGTTTGATAAAAACGGCTGCTACTCGGGCAGCGCTGTCAC-GA 325
||.||.|||||||||||||||||.||.||.||.||.|||||..||.| ||
BL03892___sac 274 AGCGACTGGTTTGATAAAAACGGTTGTTATTCAGGAAGCGCGATCGCTGA 323
BSNT_05817___ 326 AAGACGATCGGCTCTATCTGTTTTACACAGGAAATGTCAGGGATCAG-GA 374
|| |.|||..|||..|||||||||||||.||.||||||||.|| |.| ||
BL03892___sac 324 AA-ATGATGTGCTGCATCTGTTTTACACGGGGAATGTCAGAGA-CGGCGA 371
BSNT_05817___ 375 TGGAAACCGGGAAACGTATCAATGCCTTGCTGTTTCTGACGACGGGCTGT 424
.|||||..||||.||.||||||||.||.||.||.||..|.|||||..|.|
BL03892___sac 372 GGGAAATAGGGAGACCTATCAATGTCTCGCCGTCTCAAAAGACGGCATCT 421
BSNT_05817___ 425 CCTTTGAGAAAAAGGGTGTTGTCGCCCGCCTTCCGGAAGGATATACGGCG 474
|.|||||.||..||||.|||||.||..|.||||||.||||.||||||||.
BL03892___sac 422 CGTTTGAAAAGCAGGGGGTTGTTGCAAGGCTTCCGAAAGGGTATACGGCT 471
BSNT_05817___ 475 CATTTTCGCGATCCGAAGGTATGGGAGCATGAA-GGCACATGGTATATGG 523
|||||.|||||.|||||.|||| |||..|.||| ||||..|||||.||||
BL03892___sac 472 CATTTCCGCGACCCGAAAGTAT-GGAAAAAGAACGGCAGCTGGTACATGG 520
BSNT_05817___ 524 TGATTGGTGCGCAAACAGAGAAT-TTGAAAGGGCA-GGCTGTATTGTTTG 571
||.|.||.||.||.||.||.||| ||| ||||.| |||.||..|||||.
BL03892___sac 521 TGCTCGGCGCCCAGACTGAAAATCTTG--AGGGAAGGGCGGTGCTGTTTC 568
BSNT_05817___ 572 CTTCTGATAACCTGAGTGAGTGG-AGATTTCTTGGCCCGATA--ACCGGC 618
..||.|||||.||||..||.||| || ||.||.|| ||||| ||.||
BL03892___sac 569 AATCGGATAATCTGAAGGACTGGCAG-TTCCTCGG--CGATATCACAGG- 614
BSNT_05817___ 619 GCGGGCTTCA---ACGG----GCTGGACGATTTTGGATACATGTGGGAAT 661
|||| ||.| |||.|..||.||.||.||.||||||||||
BL03892___sac 615 ------TTCAAATACAGATCAGCTCGGGGAATTCGGCTATATGTGGGAAT 658
BSNT_05817___ 662 GTCCGGATTTGTTTTCCCTTCAAGGATCG-----GACGTGCTGATTGTTT 706
|.||.||..||||....|| ||| || |||||..|.|||||.|
BL03892___sac 659 GCCCTGACATGTTCGAACT----GGA-CGGCAAAGACGTCTTAATTGTCT 703
BSNT_05817___ 707 CGCCTCAAGGGCTTGAGGCTGACGGTTTCCGTTATCAGAACGTATATCAA 756
..||.|||||.|||||.||.||.|...|.|..||.||.|||||.|||||.
BL03892___sac 704 GTCCGCAAGGCCTTGAAGCAGAAGAGATGCTCTACCAAAACGTCTATCAG 753
BSNT_05817___ 757 TCAGGTTATTTTGTCGGGTGTCTCGATTATAACAAGCCTGAA---CTG-- 801
|||||.||||||||||| .||.|..|||.|| ||||| |||
BL03892___sac 754 TCAGGCTATTTTGTCGG------TGAATTGAACGAG-CTGAAACCCTGGT 796
BSNT_05817___ 802 --AAGCATGGTGAATTTACG--GAGCTTGATCAAGGTTTTGATTTTTACG 847
|..||.||.|| ||.|| ||||||||.|..||.|||||.|||||.|
BL03892___sac 797 TTACACACGGAGA--TTTCGAAGAGCTTGACCGCGGCTTTGACTTTTATG 844
BSNT_05817___ 848 CGCCGCAAAC-ACTTGAAGA-TAATCAGGGCAGACGAATTTTGTTTGCAT 895
|||||||.|| || ..|||| .|||||||.|.|| |.||.|||.||||.|
BL03892___sac 845 CGCCGCAGACGAC-AAAAGACGAATCAGGCCGGA-GGATATTGGTTGCCT 892
BSNT_05817___ 896 GGATGGCTGTGCCTGACCAGGATGAA-GGATCTCATCCGACGATTGACTA 944
||||||.|||.||.|||||.|||||| .||.| ||.|||||||||....|
BL03892___sac 893 GGATGGGTGTTCCAGACCAAGATGAACAGAGC-CAGCCGACGATTCCGCA 941
BSNT_05817___ 945 TCACTGGATTCACTGCATGACGCTGCCGAGACAGCTG-----ACAATATC 989
|||.|||.|.|||||.|||||..|||||||..|..|| ||||.|
BL03892___sac 942 TCAATGGGTGCACTGTATGACATTGCCGAGGGAATTGCATTTACAAAA-- 989
BSNT_05817___ 990 AGGCGAGAAGCTGATTCAGCAGCCGCTGCCTGAGCT--GAAAGCCATGCG 1037
|||.||..|..||||..|.|||.|....||||| |||.|| |.||
BL03892___sac 990 ---CGATAAAATCGTTCAAAAACCGGTCGAGGAGCTTAGAACGC--TCCG 1034
BSNT_05817___ 1038 CAGAAATGAGAAAAAAATACACATCAATATGCATGGATCATCTGGTACGC 1087
|..|||.| |||||.||.|..|||||| |||
BL03892___sac 1035 CCAAAACG----AAAAAAACGCGGCAATAT-----------------CGC 1063
BSNT_05817___ 1088 TTCCAGTGGAA--AAG---CCTGAAAGAGCTGAGATTCTGCTGGAAGACA 1132
|| || ||| || ||||.|...||.||| .
BL03892___sac 1064 TT-------AATCAAGGCACC-GAAAAATTGGACATT------------G 1093
BSNT_05817___ 1133 TTCATACGG----AGTCTG-GCTTTTCAATCAGTATCCGCGGAACGGCTA 1177
||||..||| || ||| ||||||| ||||| |||| |..|.||
BL03892___sac 1094 TTCAACCGGACAAAG-CTGAGCTTTTC-ATCAG--TCCG----AAAGTTA 1135
BSNT_05817___ 1178 ---------------CGTTTTCCTTC-----------------------C 1189
.|.|||||||| |
BL03892___sac 1136 TTGAAGAGGGTTTTGAGATTTCCTTCAGGGGTGCAGCCCGACTCATATAC 1185
BSNT_05817___ 1190 AA-AAAGACGAGGGGATTGTTACGCTGGAACGAAAGAGCT---TTGACGG 1235
|| ||||..||.||.||..|.||..||||..||||.||.| ||||.|.
BL03892___sac 1186 AATAAAGCAGAAGGCATCATAACCTTGGAGAGAAACAGTTATGTTGATGA 1235
BSNT_05817___ 1236 AAAAAGAAAAGAGTCGAGACATTGCCGCATCAAGGA--TTTGCA--TACC 1281
|||||...||| |.|||||.|||||..|..|||| ||.||| |
BL03892___sac 1236 AAAAACGGAAG---CCAGACAGTGCCGTTTGCAGGAGCTTCGCAATT--- 1279
BSNT_05817___ 1282 GTACACATGTTTCTCGACGCGTCATCTGTGGAAATCTTTATCAATAACGG 1331
||.||||.|||.|.|||||.||.|||.|.||||||||..|||||.|.||
BL03892___sac 1280 -TAAACATCTTTTTAGACGCCTCTTCTATTGAAATCTTCGTCAATGAGGG 1328
BSNT_05817___ 1332 AGAAGAGGTCTTTAGTGCGAGATATTTTCCTTTCCCGGGAAATCATGAAG 1381
|||.||.|||||||..||.|||||||||||||.||||||||||.||||.|
BL03892___sac 1329 AGAGGAAGTCTTTACGGCAAGATATTTTCCTTACCCGGGAAATAATGATG 1378
BSNT_05817___ 1382 TAACAGCCAGTTCGACCGG----------GAAATCTGA-AATGAATGTCT 1420
| ||.||.|.| |||||| | |||||||||..
BL03892___sac 1379 T---------TTGGATCAGTGCCAGAAAAGAAATC--ATAATGAATGTGA 1417
BSNT_05817___ 1421 TAATTTGGACACTTATG---TAG 1440
.|...|||||| ||| ||.
BL03892___sac 1418 CATCCTGGACA---ATGGCATAA 1437
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