Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05821 and BL03889
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:54
# Commandline: needle
# -asequence dna-align/BSNT_05821.1.5803.seq
# -bsequence dna-align/BL03889___sacT.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05821-BL03889___sacT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05821-BL03889___sacT.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05821
# 2: BL03889___sacT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 846
# Identity: 377/846 (44.6%)
# Similarity: 377/846 (44.6%)
# Gaps: 372/846 (44.0%)
# Score: 1339.5
#
#
#=======================================
BSNT_05821 0 -------------------------------------------------- 0
BL03889___sac 1 TTGAAAATCTATAAAGTATTGAACAACAATGCAGCAATCATAAAGGAGGA 50
BSNT_05821 0 -------------------------------------------------- 0
BL03889___sac 51 TGGTCAAGAAAAAATTGTCATGGGACCTGGTATCGCTTTTCAAAAAGGCA 100
BSNT_05821 0 -------------------------------------------------- 0
BL03889___sac 101 AAAACGATACCATTCCAAGAAACAAGGTAGAAAAAATTTTTACCATTCAT 150
BSNT_05821 0 -------------------------------------------------- 0
BL03889___sac 151 GAAGAAAATGAAAAGTTTAAACAAATCCTCGAAACACTTCCGGAAGAACA 200
BSNT_05821 0 -------------------------------------------------- 0
BL03889___sac 201 TATTGAAGCTGCCGAAGAGATCATCAGCTATGCGGAAGGGCAGCTGTCCG 250
BSNT_05821 0 -------------------------------------------------- 0
BL03889___sac 251 CACCGTTGAGCGATCATATCCACATCGCCCTTGTGGATCATTTGTCATTT 300
BSNT_05821 1 ------------------------------------------TTGCTGCA 8
|||.|..|
BL03889___sac 301 GCGATCGAGCGAGTCCGCAAAGGATTCGTCATTCAAAATAAATTGTTAAA 350
BSNT_05821 9 TGAGATAAAGGCGCTCTATAAAAAAGAATATGAGATCGGCCTGTGGGCGA 58
|||.||.||.|||||.|||||||||||||||||||||||.||.|||||.|
BL03889___sac 351 TGAAATCAAAGCGCTTTATAAAAAAGAATATGAGATCGGACTCTGGGCAA 400
BSNT_05821 59 TCGGACAT---GTAAAAGAGACATTGGGCATGTC---TCTGCCTGAAGAT 102
||| || ||.|||||.|.|.| |.|.||| | |||||||.|||
BL03889___sac 401 TCG---ATTTGGTCAAAGAAAAACT--GAAAGTCGAAT-TGCCTGATGAT 444
BSNT_05821 103 GAAGCGGGTTATATTGCCCTTCACATCCATACGGCGAAGATGGATGCGGA 152
|||||||||||||||||.||.||.||.|||||.||.||.|||||||||||
BL03889___sac 445 GAAGCGGGTTATATTGCGCTGCATATTCATACCGCAAAAATGGATGCGGA 494
BSNT_05821 153 GAGCATGTATTCGGCGCTGAAGCATACGACCATGATCAAAGAAATGATAG 202
.|.||||.|...|.|.||.||..|.||||.|||.|||||||||.||||||
BL03889___sac 495 AAACATGCAGAAGACTCTAAAATACACGAACATCATCAAAGAATTGATAG 544
BSNT_05821 203 AGAAAATAGAACAATACTTTAATCGAAAGGTGGATGAAAACAGCATTTCC 252
|.|||||.|||...|..||.||||..|||.|.||.|||||||||||.||.
BL03889___sac 545 AAAAAATCGAATGCTGTTTCAATCAGAAGATTGACGAAAACAGCATCTCA 594
BSNT_05821 253 TATCAACGCCTTGTCACGCATTTGCGATACGCGGTCAGCCGGTTGGAATC 302
|||||.||.||||||||||||.|..|.||.||..|||.||||.|||||||
BL03889___sac 595 TATCAGCGTCTTGTCACGCATCTCAGGTATGCCATCAACCGGCTGGAATC 644
BSNT_05821 303 AAATGAAGCGCTCCATCGT-ATGGACGAGGAGATGCTTTATTTCATCCAA 351
||||||||||.|.||| || ||||||||.||.||||||||||||||||..
BL03889___sac 645 AAATGAAGCGTTTCAT-GTCATGGACGATGACATGCTTTATTTCATCCGG 693
BSNT_05821 352 AAAAAGTATTC----ATTCGCCTATCAATGTGC-GCTGGAGCTGGCGGAG 396
.||||||||.| | .|||.|.|||||| ||.|| |||||||||.
BL03889___sac 694 CAAAAGTATCCTGAAA----GCTACCGATGTGCGGCAGG-GCTGGCGGAT 738
BSNT_05821 397 TTTTTGAAAAATGAATATCAATTACATTTGCCGGAATCCGAGGCCGGCTA 446
|...|.||||.|||||||.|..|.|||.|.||||||||.||.|.|||.||
BL03889___sac 739 TACGTAAAAACTGAATATGATCTTCATCTTCCGGAATCAGAAGTCGGATA 788
BSNT_05821 447 TATCACGCTGCATGTCCAGCGTCTTCAA-GAT--CTCTCGGAATAA 489
|||.|||||||||||||||||| ||.|| ||| ||.|.|| |||
BL03889___sac 789 TATTACGCTGCATGTCCAGCGT-TTAAATGATTCCTATAGG--TAA 831
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