Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05826 and BL03888
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:54
# Commandline: needle
# -asequence dna-align/BSNT_05826___ywcH.1.5803.seq
# -bsequence dna-align/BL03888___ywcH.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05826___ywcH-BL03888___ywcH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05826___ywcH-BL03888___ywcH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05826___ywcH
# 2: BL03888___ywcH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1072
# Identity: 697/1072 (65.0%)
# Similarity: 697/1072 (65.0%)
# Gaps: 134/1072 (12.5%)
# Score: 2172.0
#
#
#=======================================
BSNT_05826___ 1 ATGGTTTCATTAAGTATATTAGATCAATCTCCAGTATCAGAGGGCAGCAA 50
|||.|.||||||||.|||.|.|||||..||||.||.||.||.||.|||||
BL03888___ywc 1 ATGTTGTCATTAAGCATACTGGATCAGACTCCTGTTTCTGAAGGAAGCAA 50
BSNT_05826___ 51 TGCAGAAACGGCCTTACAGCAAACCGTTGCGCTTGCCCAAGCTGCTGAGG 100
..|.|||..|||.||.|||||.||.||.|.||||||.|||||.||.|||.
BL03888___ywc 51 ACCTGAACTGGCTTTGCAGCATACGGTGGAGCTTGCGCAAGCGGCGGAGC 100
BSNT_05826___ 101 ACCTTGGATATAAGAGATTTTGGGTTTCTGAGCATCACTTTTCAA--AAC 148
..||.|||||.|||||.|||||||||||||||||.||.|||||.| |||
BL03888___ywc 101 GGCTCGGATACAAGAGGTTTTGGGTTTCTGAGCACCATTTTTCCAGGAAC 150
BSNT_05826___ 149 GGCTGGCAGGGTCCAGTCCTGAGGTGCTAATCAGTCATATAGCGGCGAAA 198
.||||||||||.|||||.|||||.||.|||.||.||.|.|||||.|||
BL03888___ywc 151 --TTGGCAGGGTCAAGTCCGGAGGTTCTGATCGGTTATCTTGCGGCTAAA 198
BSNT_05826___ 199 ACAAAGCGAATCCGTGTTGGATCAGGAGGAGTCATGCTGCCGCATTACAG 248
|||.||...||||||.|.|||||.||.||.||||||||.|||||||||||
BL03888___ywc 199 ACAGAGAAGATCCGTATAGGATCCGGCGGCGTCATGCTTCCGCATTACAG 248
BSNT_05826___ 249 TGCTTATAAAGTAGCTGAAAACTTTCGTGTTCTGGAGGGGCTGACACCAG 298
.||.||.||.||.||.||||||||.||.||..||||.||.||..|.||.|
BL03888___ywc 249 CGCCTACAAGGTGGCGGAAAACTTCCGCGTCTTGGAAGGACTAGCGCCCG 298
BSNT_05826___ 299 GAAGAATTGACCTGGGGCTTGGCAGAGCACCGGGGGGAATGCCGATTGCA 348
|.||.|||||.||.||..|.||..|.||.|||||.||.||||||||.||.
BL03888___ywc 299 GCAGGATTGATCTAGGTGTCGGACGTGCTCCGGGAGGGATGCCGATCGCT 348
BSNT_05826___ 349 TCATGGGCGCTGAATGACGGCGGTAAG-CGCAATGCTGATCAGTATCCGC 397
|||..|||.||..|..|.||.|| ||| ||.|..|||||.||.|||||..
BL03888___ywc 349 TCAATGGCCCTTCAAAATGGAGG-AAGACGGATGGCTGACCAATATCCAG 397
BSNT_05826___ 398 AGCAAATCAAGGAGCTGACCATGTATTTGCATGATTTGGCGGATGATAAA 447
|.|||||..||||.||...||..|||||..|.|||...||.|||||..|.
BL03888___ywc 398 AACAAATTCAGGACCTCGTCACATATTTATACGATCAAGCCGATGAACAT 447
BSNT_05826___ 448 CACCGTTTTCCGAATCTGACCGCTGCGCCGCATATTTCAACGGCTCCGGA 497
|||||.|||||.||..|||||||..|||||.|.||..|.||.||.||.|.
BL03888___ywc 448 CACCGCTTTCCCAACTTGACCGCAACGCCGAACATCGCCACAGCGCCCGC 497
BSNT_05826___ 498 TGTGTGGCTGCTCGGCTCATCTGGAGAAAGCGCGCTGCTCGCAGCTGAAT 547
|||.||||||||||||||.||.||.||||||||...|||.||.||..||.
BL03888___ywc 498 TGTTTGGCTGCTCGGCTCCTCAGGGGAAAGCGCAAGGCTTGCCGCCCAAA 547
BSNT_05826___ 548 CTGGCGCTGGC----TATATGTTTGCCCATTTTATCAATGGAGAGGGCGG 593
|.|| ||| ||||..|||||.||.|||||.||.||.||.|||||
BL03888___ywc 548 CAGG----GGCATCATATACATTTGCTCAATTTATTAACGGTGAAGGCGG 593
BSNT_05826___ 594 AGAGGGTACTGTCAGACAGTATAAGAG-GAGATTCAAACCATCTGTGTTA 642
|||.|...|.|.|||||.|||.|| || |||.|||.||||.|||||.|||
BL03888___ywc 594 AGAAGAGGCGGCCAGACTGTACAA-AGAGAGGTTCGAACCTTCTGTATTA 642
BSNT_05826___ 643 GGAGATACGCCTCGAGCGGCA---------GTTGCTGTTTTTGTTCTTTG 683
||.|| || ||| || |||||.||.|||||..||||
BL03888___ywc 643 GGGGA-AC------AGC--CAAATGTGATCGTTGCCGTATTTGTGATTTG 683
BSNT_05826___ 684 TGCTGACACGGAGGAGAAGGCAGAGGAGCTTG----GGGCTGTGCTTGAT 729
.|||||.||.||.|||||.||.|||.|.|||| ..||| |.|||
BL03888___ywc 684 CGCTGAGACAGAAGAGAAAGCGGAGAACCTTGCCAAAAGCT----TGGAT 729
BSNT_05826___ 730 TTTACACTTTTGGC----------GGGA----GA--GCAGGGTATTCCTT 763
|||.|..|.||||| |||| || |.|||.| ||||.|
BL03888___ywc 730 TTTTCTTTATTGGCCAATGAACAGGGGATGGTGACCGAAGGCT-TTCCAT 778
BSNT_05826___ 764 TAGAGGGA--GTCCCT-TCGTATGAAGCTGTTCGGAAAAATACGTATTCT 810
.|..||.| |.|||| ||.|||.|| ||||||
BL03888___ywc 779 CATTGGAAACGGCCCTGTCCTATCAA------------------TATTCT 810
BSNT_05826___ 811 CCTTATG-----AACAGAGACGAATTGCTGATAATCGAAATCGAATGATT 855
||||||| ||.||||..||| ||.||||||||.||.|||.|.
BL03888___ywc 811 CCTTATGAAAGAAAGAGAGTGGAA-----GACAATCGAAAACGGATGGTC 855
BSNT_05826___ 856 GTTGGTACGAAAGAACAGGTTAAGAAGCGGCTGTTAGCTTTGAGTAAA-- 903
.|.||.|||....|.|||||.|||.|.|.||||.| |.||
BL03888___ywc 856 ATCGGAACGCCGCAGCAGGTAAAGGAACAGCTGCT---------TGAACT 896
BSNT_05826___ 904 -------GCGTATGAAACAGAGGAAATCATGGTGGTGACCATCACGCATC 946
||.||.|.|||.||.||||||||||.||||||.|||||.||..
BL03888___ywc 897 GGCCGGCGCTTACGGAACGGACGAAATCATGGCGGTGACGATCACCCACG 946
BSNT_05826___ 947 ATTTTGAAGATAAGCTCCGATCGTATCGATT-AT------TGCAG---GA 986
|||||.|||| |.||| |.|||| || |||.| ||
BL03888___ywc 947 ATTTTCAAGA------CAGAT----TGGATTCATACCGGCTGCTGGCCGA 986
BSNT_05826___ 987 GGCGTTTGCTGACTGA------ 1002
.||||||..|.|.|.|
BL03888___ywc 987 AGCGTTTCATCAGTCAATTTAG 1008
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