Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05833 and BL03874
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:54
# Commandline: needle
# -asequence dna-align/BSNT_05833___qoxD.1.5803.seq
# -bsequence dna-align/BL03874___qoxD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05833___qoxD-BL03874___qoxD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05833___qoxD-BL03874___qoxD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05833___qoxD
# 2: BL03874___qoxD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 398
# Identity: 269/398 (67.6%)
# Similarity: 269/398 (67.6%)
# Gaps: 55/398 (13.8%)
# Score: 850.5
#
#
#=======================================
BSNT_05833___ 1 ATGGC----AAACAAATCTGCTGAACACAGTCACTTTCCATGGAAACACA 46
||||| |||| ||||.|||||||||||.||||||||.|||||.||.|
BL03874___qox 1 ATGGCAGCAAAAC-AATCGGCTGAACACAGCCACTTTCCTTGGAAGCATA 49
BSNT_05833___ 47 TTGTAGGTTTTATCCTGTCTATCGTTTTGACCCTGCTGGCTCTATGGGTT 96
||||.||.||..|..||||.||.||..|||||.|..||||..|.|||||
BL03874___qox 50 TTGTCGGGTTCGTGTTGTCCATTGTGCTGACCTTATTGGCCTTGTGGGT- 98
BSNT_05833___ 97 GCAG-TGTATACTGACCTGAGCTCAT--CAGCAAAACTTTGGATTATCTT 143
| |.|||||.||..|.|| ||| |.|||||.||.||||||||.||
BL03874___qox 99 ---GATCTATACGGATTTAAG--CATGGCTGCAAAGCTGTGGATTATTTT 143
BSNT_05833___ 144 CGGCTTCGCCTTCATTCAGGCGGCGCTGCAGCTTCTCATGTTCATGCATA 193
|||.||.||..|||||||.||.|..||.|||||..|.|||||.|||||||
BL03874___qox 144 CGGTTTTGCGATCATTCAAGCTGGACTTCAGCTCTTAATGTTTATGCATA 193
BSNT_05833___ 194 TGACAGAGAGCGAAAACGGCACGATCCAAGTCGGAAACACGCTGTTCG-- 241
||||.|||||.||.|.|||||..|||||||||||.||.||||||||.|
BL03874___qox 194 TGACTGAGAGTGACAGCGGCAAAATCCAAGTCGGGAATACGCTGTTTGCC 243
BSNT_05833___ 242 --GATTCTTTGGC----GCGATCGTTATCGTACTTGGATCCATCTGGATT 285
|.||.|| || |||||..||..| ||.|||.|||||||.
BL03874___qox 244 GCGTTTATT--GCGGTTGCGATTATTGCC------GGTTCCGTCTGGATC 285
BSNT_05833___ 286 TTCGCGGCTC---ACTATCACCATGGTG---ACCATATGGACGGAAATCC 329
|||||.|||| |||||||| ||.| |||.|..||.||| |.|
BL03874___qox 286 TTCGCTGCTCACAACTATCAC---GGAGACAACCCTGAGGGCGG---TTC 329
BSNT_05833___ 330 TCCTGGAGGCGCTGAACACTCAGAGCATTCA--GGCCATAACGAATAA 375
||| |||.||..||||.||.||||| || ||.||| |||
BL03874___qox 330 TCC---AGGTGCAAAACATTCTGAGCA--CAGCGGACAT------TAA 366
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