Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05864 and BL03857
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:56
# Commandline: needle
# -asequence dna-align/BSNT_05864___ywbD.1.5803.seq
# -bsequence dna-align/BL03857___ywbD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05864___ywbD-BL03857___ywbD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05864___ywbD-BL03857___ywbD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05864___ywbD
# 2: BL03857___ywbD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1239
# Identity: 872/1239 (70.4%)
# Similarity: 872/1239 (70.4%)
# Gaps: 99/1239 ( 8.0%)
# Score: 2928.5
#
#
#=======================================
BSNT_05864___ 1 ATGAAGCTAC--TCACCCTAAAGAAAGCA--CA--CGCTGCCAAAATCAA 44
|||.| ||| |.| |||.|||.|| || ||||||.|||||.||
BL03857___ywb 1 ATGCA--TACATTAA----AAATAAAACATCCATTCGCTGCAAAAATGAA 44
BSNT_05864___ 45 AAAAGGCTATCCCCTTATCGAAAAAGAAGC----TC-TCGCAGGGAGTGC 89
|||.|||||||||||.|||||||||||.|| || ||||| .||...|
BL03857___ywb 45 AAAGGGCTATCCCCTAATCGAAAAAGAGGCCGTTTCTTCGCA-AGAAAAC 93
BSNT_05864___ 90 GGGGCACATGAAAGAAGGAGACATCGTTGAT-------ATCGTGTCTGAG 132
|| |||.|||||||| ||||.|||| |.|| .|||.
BL03857___ywb 94 GG----CATAAAAGAAGG----ATCGCTGATCAGGATAACCG---ATGAA 132
BSNT_05864___ 133 AGCGGCGAGTTTCTCGCGCGGGGCTATTACGGCCTGCAAAATAAAGGGGT 182
|.||||..||||.|.|....|||||||||.|||..||||||.||||||.|
BL03857___ywb 133 AACGGCAGGTTTTTAGGAAAGGGCTATTATGGCGAGCAAAACAAAGGGAT 182
BSNT_05864___ 183 CGGCTGGACGCTTACCCGCAATAAAC----ATGAACAGATTGACCAGGCA 228
||||||||..||.||.|| |||| ..|||..||||||||||.||
BL03857___ywb 183 CGGCTGGATTCTGACTCG----AAACGAGGGGGAATCGATTGACCAGTCA 228
BSNT_05864___ 229 TTTTTTCTCACCAAATTAACAAAAGCGGCCCAAGCGCGCGCCAAA----C 274
||.|||.|.|.||...|..|.|||||....|||||..| ||| |
BL03857___ywb 229 TTCTTTTTAAGCAGGCTGGCGAAAGCATTTCAAGCCAG----AAAATCGC 274
BSNT_05864___ 275 TATTTGAGGCTCAAGATACAACGGCTTTCCGCCTGTTTAACGGTGAGGGC 324
|.|||.|.|..|..|||||.||.|||||.||..||||||||||.||.|||
BL03857___ywb 275 TTTTTCAAGACCCGGATACGACCGCTTTTCGTTTGTTTAACGGGGAAGGC 324
BSNT_05864___ 325 GACGGTGTCGGCGGCGTCACCATCGACTATTATGACGGCTACCTGCTGGT 374
|||||..||||||||.|.||.||.||||||||||||||||||....||.|
BL03857___ywb 325 GACGGAATCGGCGGCTTTACGATTGACTATTATGACGGCTACTATTTGTT 374
BSNT_05864___ 375 ACAATGGTACAGCAAGGGCATTTACACCTTTAAAGATATGCTAATTTCCG 424
.||||||||||||||.||.|||||.||..|||||||.|.|.|.||....|
BL03857___ywb 375 CCAATGGTACAGCAAAGGGATTTATACGCTTAAAGAAACGATTATGGAAG 424
BSNT_05864___ 425 CTTTGGATGAGATGGATCTTGATTATAAAGCGATTTACGAGAAAAAACGC 474
|..|.||||| ||.|| ..|||||||||||..||||.|||||||||||.
BL03857___ywb 425 CCCTTGATGA-ATTGA--CGGATTATAAAGCTGTTTATGAGAAAAAACGG 471
BSNT_05864___ 475 TTCGACACAGCTGGACAATACGTTGAAGATGATGACTTCGTGAAAGGGAA 524
||..|.||.||.||.||.||.||.||||||||.|||||.||.|||||..|
BL03857___ywb 472 TTTAATACGGCCGGGCAGTATGTGGAAGATGACGACTTTGTCAAAGGCGA 521
BSNT_05864___ 525 AAGAGGCGAGTTCCCGATCATCATCCAGGAGAATGGCATTCAATACGCGG 574
||||||.||.||.||||||||..|..|.|||||.||||||||.|..||.|
BL03857___ywb 522 AAGAGGAGACTTTCCGATCATTGTGAAAGAGAACGGCATTCATTTTGCCG 571
BSNT_05864___ 575 TGGATTTGAATGAAGGCGCCATGACGGGCATCTTTTTGGATCAGAGACAT 624
|..|..|.|||||.||.||.|||||.|||.|.|||.|.||||||.|.|||
BL03857___ywb 572 TTTACCTCAATGACGGAGCGATGACCGGCGTTTTTCTCGATCAGCGCCAT 621
BSNT_05864___ 625 GTGCGCAAGGCGATCAGAGACCGCTATGCAAAAGGGAAAACCGTTTTAAA 674
||.|||||||||.|.||.|||||.|||||..||||||||||||...|.||
BL03857___ywb 622 GTCCGCAAGGCGGTTAGGGACCGGTATGCGGAAGGGAAAACCGCGCTCAA 671
BSNT_05864___ 675 TACATTTTCTTATACGGGTGCATTCTCCGTGGCAGCGGCGCTTGGCGGAG 724
.|||||.||.|||||.||.|||||.||.|||||.||||||||.||.||.|
BL03857___ywb 672 CACATTCTCATATACCGGCGCATTTTCTGTGGCGGCGGCGCTCGGAGGCG 721
BSNT_05864___ 725 CGGAGAAAACAACAAGCGTCGACGTGGCAAACCGAAGTCTGGCCAAAACG 774
|.||.|||||.||.|||||.||.||.||||||||.||..|...||..|||
BL03857___ywb 722 CTGAAAAAACGACGAGCGTTGATGTTGCAAACCGCAGCTTAAGCAGGACG 771
BSNT_05864___ 775 ATCGAGCAATTCAGCGTGAACAAGCTGGATTACGAAGCGCACGACATTAA 824
|||||.||||||||.||||||..||||||.||.|||||.||.||.|||||
BL03857___ywb 772 ATCGAACAATTCAGTGTGAACGGGCTGGACTATGAAGCTCATGAGATTAA 821
BSNT_05864___ 825 AGTGATGGACGTTTTTAATTATTTTTCATATGCTG-AAAAAAAGGATTTG 873
|||.||||||||||||||.||||||..|||.||.| .|||||||.|.|.|
BL03857___ywb 822 AGTCATGGACGTTTTTAAATATTTTCAATACGCGGCCAAAAAAGAACTCG 871
BSNT_05864___ 874 CGCTTTGATCTGATTATTCTCGATCCGCCTTCCTTTGCGCGCACAAAAAA 923
| ||||||.||..|.||.||.|||||.|||||.||||||.|.||.|||||
BL03857___ywb 872 C-CTTTGACCTTGTCATCCTTGATCCCCCTTCATTTGCGAGAACGAAAAA 920
BSNT_05864___ 924 ACGCACCTTCAGCGCGGCCAAGGATTATAAAAACCTGCTGAAGGAAACGA 973
.|..||.|||||||||||.||||||||.|||||.|||.|.||.||..|||
BL03857___ywb 921 GCATACATTCAGCGCGGCAAAGGATTACAAAAATCTGTTAAAAGACGCGA 970
BSNT_05864___ 974 -TCGCCATCACTGCTGA-CAAGGGTGTCATTGTTGCCTCTACAAACAGCA 1021
||| .||||||...|| ||| |||||.||.||.||.||.||.|||||||
BL03857___ywb 971 TTCG-AATCACTAAAGATCAA-GGTGTGATCGTCGCTTCGACGAACAGCA 1018
BSNT_05864___ 1022 GCGCATTTGGCATGAAGAAATTCAAAGGCTTTATCGATGCCGCATTTAAA 1071
||||||||||.|||||.||||||||||||||||||||.|..||||..|||
BL03857___ywb 1019 GCGCATTTGGAATGAAAAAATTCAAAGGCTTTATCGAAGAGGCATGCAAA 1068
BSNT_05864___ 1072 GAAAC--AAACGAACGCTACACCATCATTGAGGA--ATTTACGC-TGCCG 1116
||||| ..||| ||||..||..|..||||||| ||| ||| |.|||
BL03857___ywb 1069 GAAACGGGGACG--CGCTTTACAGTGCTTGAGGAGCATT--CGCTTCCCG 1114
BSNT_05864___ 1117 AAGGATTTCAAAACGATTTCGGCA----TTTCCGGAAGGCAACTACCTGA 1162
|| |||||.||||||.| |.| |.|||.||.|||.|.||..|.|
BL03857___ywb 1115 AA-GATTTTAAAACGGT----GAAAAGCTATCCTGAGGGCGATTATTTAA 1159
BSNT_05864___ 1163 AAGTGGTCCTTCTGCAG-------------AAAAAGTAA 1188
||||.|||.||.|.||| ||
BL03857___ywb 1160 AAGTTGTCTTTTTACAGGTTCGCCATCGTTAA------- 1191
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