Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05884 and BL03845

See Amino acid alignment / Visit BSNT_05884 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:57
# Commandline: needle
#    -asequence dna-align/BSNT_05884___ywaC.1.5803.seq
#    -bsequence dna-align/BL03845___ywaC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05884___ywaC-BL03845___ywaC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05884___ywaC-BL03845___ywaC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05884___ywaC
# 2: BL03845___ywaC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 664
# Identity:     468/664 (70.5%)
# Similarity:   468/664 (70.5%)
# Gaps:          35/664 ( 5.3%)
# Score: 1604.0
# 
#
#=======================================

BSNT_05884___      1 ATGGAT----------------TTAT--------CTGTAACACATATGGA     26
                     ||||||                |.||        |||.|.|.||.||.||
BL03845___ywa      1 ATGGATATGGCGATAGATAAGATGATAGGACTGCCTGAAGCCCAGATAGA     50

BSNT_05884___     27 CGATTT-AAAAACAGTAATGGAAGATTGGAAAAATGAATTATTAGTTTAT     75
                     .||||| |.|||| .|.|||||.||.|||||.||.|||.|..|.||.|||
BL03845___ywa     51 AGATTTGAGAAAC-CTGATGGAGGACTGGAAGAACGAACTCCTCGTCTAT     99

BSNT_05884___     76 AAATTTGCGCTAGATGCGCTCGATACAAAGTTCTCAATTATCAGCCAGGA    125
                     ||||||||..|.|||....|.|||||.|||||.||.||||||||||||||
BL03845___ywa    100 AAATTTGCCTTGGATCAAATGGATACGAAGTTTTCGATTATCAGCCAGGA    149

BSNT_05884___    126 ATATAACCTCATTCACGGACACAACCCGATTGAACATACAAAATCCCGTG    175
                     ||||||..|.||||||||.||||||||||||||||||||.|||||..|.|
BL03845___ywa    150 ATATAATTTAATTCACGGCCACAACCCGATTGAACATACGAAATCAAGGG    199

BSNT_05884___    176 TCAAAAGCTTTGAAAGCATCGTGAATAAGTTAATGAGAAAGGGCTGTGAG    225
                     |.|||||||||||||||.|..|.||.|||.|..||.|.||||||||.||.
BL03845___ywa    200 TGAAAAGCTTTGAAAGCCTGATTAACAAGCTTGTGCGGAAGGGCTGCGAT    249

BSNT_05884___    226 ATTACGACGAAGGAAATGAAGGAGCATATTCACGACATTGCCGGCGTGCG    275
                     ||||||||.||||.....||||||||.||..|.||.||.|||||..|..|
BL03845___ywa    250 ATTACGACAAAGGCCGCTAAGGAGCACATCAATGATATCGCCGGTCTCAG    299

BSNT_05884___    276 CATCATCTGTTCCTTTATTTCTGACATTTATAATGTCG-TGAATGTGTTG    324
                     .|||.||||.||.|||.|.||.||||||||.|||.|.| |||| |||.||
BL03845___ywa    300 AATCGTCTGCTCGTTTTTATCCGACATTTACAATATGGTTGAA-GTGCTG    348

BSNT_05884___    325 AAGCAGCATGAAGATTTGAGAATCGTAAAGGTAAAGGATTATATCCAGAC    374
                     |||.|.||||||||..|.|.|||..||||..|.|||||.||.||..|.|.
BL03845___ywa    349 AAGGAACATGAAGACATCAAAATTTTAAAAATGAAGGACTACATTAAAAA    398

BSNT_05884___    375 ACCCAAACCGAATGGCTATCGAAGCCTGCATTTAATCATTGAGATGCCTG    424
                     .||.||.|||||.||.||..|.||.||.||.|||||..|.||..||||.|
BL03845___ywa    399 TCCGAAGCCGAACGGATACAGGAGTCTTCACTTAATTGTAGAAGTGCCCG    448

BSNT_05884___    425 TGAATTTAACGAACCGTGTGGAATACGTCAAAGCAGAAATTCAAATCCGG    474
                     |..|.||.||.|||||.||.||..|||.|||.|..||.|||||||||.||
BL03845___ywa    449 TTTACTTGACCAACCGCGTCGAGCACGCCAAGGTGGAGATTCAAATCAGG    498

BSNT_05884___    475 ACAATCGCGATGGATTTCTGGGCGAGCCTTGAACATAAAATTTATTATAA    524
                     ||.||||||||||||||||||||||||||.||.||||||||.||.||.||
BL03845___ywa    499 ACGATCGCGATGGATTTCTGGGCGAGCCTCGAGCATAAAATCTACTACAA    548

BSNT_05884___    525 ATTGAACAATGACGTTCCTAAGCAATTAACAGATGAGCTGAAGGAAGCCG    574
                     ||||||||||||.||.||.||.||..|.||.|||||||||||.|||||.|
BL03845___ywa    549 ATTGAACAATGAAGTGCCGAACCAGCTCACTGATGAGCTGAAAGAAGCGG    598

BSNT_05884___    575 CGGAGATTGCCCATTACCTAGATGAGAAAATGCTGGGGATT--AAGAAAG    622
                     |.||.||.||..|.|||.|.|||||.||.|||||....|||  ||.||  
BL03845___ywa    599 CTGACATCGCGAACTACTTGGATGAAAAGATGCTTCATATTCGAACAA--    646

BSNT_05884___    623 AAGTGGATTAG---    633
                     |||.||||.|.   
BL03845___ywa    647 AAGCGGATCAATAA    660


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